-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathusage.html
executable file
·519 lines (463 loc) · 23.2 KB
/
usage.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
<!DOCTYPE html>
<!--
BrainBrowser: Web-based Neurological Visualization Tools
(https://brainbrowser.cbrain.mcgill.ca)
Copyright (C) 2011
The Royal Institution for the Advancement of Learning
McGill University
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as
published by the Free Software Foundation, either version 3 of the
License, or (at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Author: Tarek Sherif <[email protected]> (http://tareksherif.ca/)
-->
<style>
.cc_mapping_text{
/*font-size: 200px;*/
/*color: white;*/
text-shadow:
1px 1px 1px gray,
3px 2px 2px black,
-1px -0.5px 0.2px white;
}
.cc_mapping_text:hover{
text-shadow: 1px 1px 1px white,
-1px -0.5px 0.2px black;
}
</style>
<head>
<link rel="icon" type="image/png" sizes="16x16" href="img/ccmapping-01.png">
<link type="text/css" href="css/ui-darkness/jquery-ui-1.8.10.custom.css" rel="Stylesheet"/>
<link type="text/css" href="css/aboout_page.css" rel="stylesheet">
<link type="text/css" href="css/bootstrap.min.css" rel="stylesheet">
<link type="text/css" href="css/main-page.css" rel="stylesheet">
<title>CCmapping</title>
<!-- relative-->
<div class="navbar navbar-expand-lg fixed-top navbar-dark bg-primary">
<div class="container">
<a href="CCmapping.html" class="navbar-brand cc_mapping_text" style="font-size: 1.3rem"><strong>CCmapping</strong></a>
<!-- <a class="btn btn-primary btn-xl" href="CCmapping.html" style="font-size: 0.5rem">CCmapping</a>-->
<!-- <a class="btn btn-primary btn-xl" href="CCmapping.html" style="font-size: 0.5rem">CCmapping</a>-->
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarResponsive"
aria-controls="navbarResponsive" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div style="margin-top:0.13rem" class="collapse navbar-collapse" id="navbarResponsive">
<ul class="navbar-nav">
<li class="nav-item">
<!-- <a class="nav-link" href="CCmapping_index.html">Home</a>-->
<a class="nav-link" href="home.html">Home</a>
</li>
<li class="nav-item">
<!-- <a class="nav-link" href="CCmapping_usage.html">Usage</a>-->
<a class="nav-link" href="usage.html">Usage</a>
</li>
<!-- <li class="nav-item">-->
<!-- <a class="nav-link" href="about.html">About</a>-->
<!-- </li>-->
</ul>
</div>
</div>
</div>
</head>
<div class="clearfix"></div>
<h1 class="text-center" style="width: 100%;margin-top: 80px" >How to use CCmapping?</h1>
<!--<div class="font-weight-bold text-center" style="font-size: 2.2rem;width: 100%;margin-top: 80px">How to use CCmapping?</div>-->
<br/><br/>
<body>
<h2 class="text-center font-weight-bold" style="width: 100%;margin-top: 50px" >Layout of Interface</h2>
<div class="container">
<div class="row">
<a class="text-white-75" style="text-decoration: none;align-content: center;padding-left: 10%">
<img src="img/usage-0.png" class="text-center" style="width: 90%; height:auto; border-radius: 1%" alt="">
</a>
</div>
</div>
<!--<img style="" src="img/usage-0.png">-->
<h2 class="text-center font-weight-bold" style="width: 100%;margin-top: 124px" >mCC Panel</h2>
<div class="block block--white" style="padding-top: 10px;padding-bottom: 70px">
<div class="block__container">
<style>
#homepage-products-carousel img {
max-width: 100%;
}
.sticky-bulb__lightable-item img {
width: 100%;
}
@media only screen and (max-width: 991px) {
.sticky-bulb__lightable-item img {
margin-top: 32px;
}
#homepage-products-block .title1 {
margin-bottom: 48px;
}
}
@media only screen and (min-width: 992px) {
#homepage-products-block__moving-element {
margin-top: 48px;
/* Align below the right column's title */
}
}
#homepage-products-block__moving-element_c {
display: flex;
flex-direction: column;
justify-content: center;
height: 100%;
}
#homepage-products-carousel .carousel-inner .carousel-item {
transition: -webkit-transform 0.4s ease;
transition: transform 0.4s ease;
transition: transform 0.4s ease, -webkit-transform 0.4s ease;
}
#homepage-products-block__sticky-element a {
transition: color 0.25s;
font-weight: 600;
text-decoration: underline;
}
#homepage-products-block__sticky-element a:hover {
color: #161616 /* $black-3 */
}
</style>
<div id="homepage-products-block" class="row">
<div id="homepage-products-block__moving-element" class="col-lg-5 sticky-bulb__moving-element d-md-none d-lg-block"
style="width: 40%">
<div id="homepage-products-block__moving-element_c">
<div id="homepage-products-carousel" class="carousel slide">
<div class=" carousel-inner">
<div class="carousel-item active" data-menu-idx="1">
<img class="d-none d-lg-block" src="img/mCCpanel-1.png" alt="First slide">
</div>
<div class="carousel-item" data-menu-idx="2">
<img class="d-none d-lg-block" src="img/mCCpanel-2.png" alt="Second slide">
</div>
<div class="carousel-item" data-menu-idx="3">
<img class="d-none d-lg-block" src="img/mCCpanel-3.png" alt="Third slide">
</div>
</div>
</div>
</div>
</div>
<div class="col-lg-1 d-md-none d-lg-block"></div>
<div id="homepage-products-block__sticky-element" class="col-lg-6 col-md-12 sticky-bulb__sticky-element">
<div class="sticky-bulb__lightable-item sticky-bulb__lightable-item--active" data-menu-idx="1" style="margin-top: 20px">
<div style="float:left" class="title3">Select mCC region on the different resolution</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div>
<ul>
<li>Choose the resolution on the mCC operation panel.</li>
<li>Double-click the voxel/subdivision on mCC.</li>
<li>Check the resultant cortical topographic map on the cortical cortex panel.</li>
</ul>
</div>
<img class="d-lg-none" src="img/mCCpanel-1.png">
</div>
<div class="sticky-bulb__lightable-item" data-menu-idx="2">
<div style="float:left" class="title3">Visualize mCC topographic result</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div> <ul><li> Select/upload cortical ROI on the cortical cortex panel.</li>
<li>Check the resultant mCC topographic map.</li>
<li>Choose strength measure you need.</li>
<li>Change color-map on the operation panel.</li>
<li>Zoom in and out the result by scrolling.</li></ul></div>
<img class="d-lg-none" src="img/mCCpanel-2.png">
</div>
<div class="sticky-bulb__lightable-item" data-menu-idx="3">
<div style="float:left" class="title3">Upload ROI on mCC mask</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div> <ul><li>Download mCC mask by clicking the 'CC mask' button.</li>
<li> Make your ROI within the mask (same layer and resolution).</li>
<li> Upload your mask by clicking 'upload' button.</li>
<li> Check the resultant cortical topographic map on the cortical cortex panel. </li></ul></div>
<img class="d-lg-none" src="img/mCCpanel-3.png">
</div>
</div>
</div>
</div>
</div>
<h2 class="text-center font-weight-bold" style="width: 100%" >Cortical Cortex Panel</h2>
<div class="block block--white" style="padding-top: 10px;padding-bottom: 70px">
<div class="block__container">
<style>
#homepage-products-carousel2 img {
max-width: 100%;
}
.sticky-bulb__lightable-item img {
width: 100%;
}
@media only screen and (max-width: 991px) {
.sticky-bulb__lightable-item img {
margin-top: 32px;
}
#homepage-products-block .title1 {
margin-bottom: 48px;
}
}
@media only screen and (min-width: 992px) {
#homepage-products-block__moving-element {
margin-top: 48px;
/* Align below the right column's title */
}
}
#homepage-products-block__moving-element_c2 {
display: flex;
flex-direction: column;
justify-content: center;
height: 100%;
}
#homepage-products-carousel2 .carousel-inner .carousel-item {
transition: -webkit-transform 0.4s ease;
transition: transform 0.4s ease;
transition: transform 0.4s ease, -webkit-transform 0.4s ease;
}
#homepage-products-block__sticky-element2 a {
transition: color 0.25s;
font-weight: 600;
text-decoration: underline;
}
#homepage-products-block__sticky-element2 a:hover {
color: #161616 /* $black-3 */
}
</style>
<div id="homepage-products-block2" class="row">
<div id="homepage-products-block__moving-element2" class="col-lg-5 sticky-bulb__moving-element d-md-none d-lg-block"
style="width: 40%">
<div id="homepage-products-block__moving-element_c2">
<div id="homepage-products-carousel2" class="carousel slide">
<div class=" carousel-inner">
<div class="carousel-item active" data-menu-idx="1">
<img class="d-none d-lg-block" src="img/cortexpanel-1.png" alt="First slide">
</div>
<div class="carousel-item" data-menu-idx="2">
<img class="d-none d-lg-block" src="img/cortexpanel-2.png" alt="Second slide">
</div>
<div class="carousel-item" data-menu-idx="3">
<img class="d-none d-lg-block" src="img/cortexpanel-3.png" alt="Third slide">
</div>
<!-- <div class="carousel-item" data-menu-idx="4">-->
<!-- <img class="d-none d-lg-block" src="img/up1.png" alt="Fourth slide">-->
<!-- </div>-->
</div>
</div>
</div>
</div>
<div class="col-lg-1 d-md-none d-lg-block"></div>
<div id="homepage-products-block__sticky-element2" class="col-lg-6 col-md-12 sticky-bulb__sticky-element">
<div class="sticky-bulb__lightable-item sticky-bulb__lightable-item--active" data-menu-idx="1" style="padding-right:2px ;margin-top: 20px">
<div style="float:left;" class="title3">Select cortical parcels on the different parcellations</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div>
<ul><li> Choose parcellation on the cortical cortex operation panel.</li>
<li> Double-click the a parcel of the pair on cortex.</li>
<li> Check the resultant mCC topographic map on the mCC panel.</li></ul>
</div>
<img class="d-lg-none" src="img/cortexpanel-1.png">
</div>
<div class="sticky-bulb__lightable-item" data-menu-idx="2">
<div style="float:left" class="title3">Visualize cortical topographic result</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div> <ul><li> Select/upload mCC voxel/ROI on the mCC panel.</li>
<li>Check the resultant cortical cortex topographic map.</li>
<li>Choose strength measure you need.</li>
<li>Choose result resolution. If any parcellation is chosen here, you can also choose results only including fiber connecting homotopic regions.</li>
<li> Change color-map on the operation panel.</li>
<li> Zoom in and out the result by scrolling. </li></ul></div>
<img class="d-lg-none" src="img/cortexpanel-2.png">
</div>
<div class="sticky-bulb__lightable-item" data-menu-idx="3">
<div style="float:left" class="title3">Upload ROI on cortical cortex</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div> <ul><li>Choose from left, right, whole brain in menu. A template file will be downloaded automatically.</li>
<li>Make your ROI using the downloaded template.</li>
<li>Upload your mask file by clicking 'upload' button.</li>
<li>Check the resultant mCC topographic map on the mCC panel.</li> </ul>
</div>
<img class="d-lg-none" src="img/cortexpanel-3.png">
</div>
<!-- <div class="sticky-bulb__lightable-item" data-menu-idx="4">-->
<!-- <div class="title3">Change View of Surface</div>-->
<!-- <div> <ul><li>Choose from pial, inflated, very inflated surface as your model.</li>-->
<!-- <li>Choose view position of surface model.</li>-->
<!-- <li>Use auto spin or other tool for better visualization.</li></ul>-->
<!-- </div>-->
<!-- <img class="d-lg-none" src="img/up.png">-->
<!-- </div>-->
</div>
</div>
</div>
</div>
<h2 class="text-center font-weight-bold" style="width: 100%;" >View and Info Tools</h2>
<div class="block block--white" style="padding-top: 10px;margin-top: 20px">
<div class="block__container">
<style>
#homepage-products-carousel3 img {
max-width: 100%;
}
.sticky-bulb__lightable-item img {
width: 100%;
}
@media only screen and (max-width: 991px) {
.sticky-bulb__lightable-item img {
margin-top: 32px;
}
#homepage-products-block .title1 {
margin-bottom: 48px;
}
}
@media only screen and (min-width: 992px) {
#homepage-products-block__moving-element {
margin-top: 48px;
/* Align below the right column's title */
}
}
#homepage-products-block__moving-element_c3 {
display: flex;
flex-direction: column;
justify-content: center;
height: 100%;
}
#homepage-products-carousel3 .carousel-inner .carousel-item {
transition: -webkit-transform 0.4s ease;
transition: transform 0.4s ease;
transition: transform 0.4s ease, -webkit-transform 0.4s ease;
}
#homepage-products-block__sticky-element3 a {
transition: color 0.25s;
font-weight: 600;
text-decoration: underline;
}
#homepage-products-block__sticky-element3 a:hover {
color: #161616 /* $black-3 */
}
</style>
<div id="homepage-products-block3" class="row">
<div id="homepage-products-block__moving-element3" class="col-lg-5 sticky-bulb__moving-element d-md-none d-lg-block"
style="width: 40%">
<div id="homepage-products-block__moving-element_c3">
<div id="homepage-products-carousel3" class="carousel slide">
<div class=" carousel-inner">
<div class="carousel-item active" data-menu-idx="1">
<img class="d-none d-lg-block" src="img/surfaceview.png" alt="First slide">
</div>
<div class="carousel-item" data-menu-idx="2">
<img class="d-none d-lg-block" src="img/trackinfo.png" alt="Second slide">
</div>
</div>
</div>
</div>
</div>
<div class="col-lg-1 d-md-none d-lg-block"></div>
<div id="homepage-products-block__sticky-element3" class="col-lg-6 col-md-12 sticky-bulb__sticky-element">
<div class="sticky-bulb__lightable-item sticky-bulb__lightable-item--active" data-menu-idx="1">
<div style="float:left" class="title3">Change view of surface</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div> <ul><li>Choose from pial, inflated, very inflated surface as your model.</li>
<li>Choose view position of surface model. </li>
<li>Use auto spin, wireframe or other tool for visualization.</li></ul>
</div>
<img class="d-lg-none" src="img/surfaceview.png">
</div>
<div class="sticky-bulb__lightable-item" data-menu-idx="2">
<div style="float:left" class="title3">Check track information</div>
<div style="margin-top:2px;font-size: 18px;color: #666666"> (click)</div>
<br/>
<div> <ul>
<li>Click trackinfo button (right bottom) to check track information. </li>
<li> Distance and number information of tracks are provided. </li>
<li>If parcel pair selected, cognitive information from neurosynth is provided. </li></ul></div>
<img class="d-lg-none" src="img/trackinfo.png">
</div>
</div>
</div>
</div>
</div>
<div style="width: 100%; height:40px; line-height:40px;text-align: center;">
<div style="color: #ffffff;font-size: 15px" > <a style="color: black;text-decoration: none;" href="https://beian.miit.gov.cn" target="_blank">京ICP备2022027253号</a></div>
</div>
<!-- Bootstrap core JS-->
<script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/js/bootstrap.bundle.min.js"></script>
<!-- SimpleLightbox plugin JS-->
<script src="https://cdnjs.cloudflare.com/ajax/libs/SimpleLightbox/2.1.0/simpleLightbox.min.js"></script>
<!--tong>2-->
<script src="js/jquery-1.6.4.min.js"></script>
<script src="js/jquery-ui-1.8.10.custom.min.js"></script>
<script src="js/about_page.js"></script>
<script src="./js/bootstrap.min.js"></script>
<script>
function defer(method) {
if (window.jQuery) {
method();
} else {
setTimeout(function () {
defer(method)
}, 50);
}
}
defer(function () {
var menuContainer = $("#homepage-products-block__sticky-element");
var menuContainer_items = menuContainer.find(".sticky-bulb__lightable-item");
var carouselElem = $('#homepage-products-carousel');
carouselElem.carousel()
carouselElem.carousel('pause');
carouselElem.on('slide.bs.carousel', function (e) {
var idx = $(e.relatedTarget).attr('data-menu-idx');
menuContainer_items.removeClass("sticky-bulb__lightable-item--active");
menuContainer_items.filter('[data-menu-idx=' + idx + ']').addClass("sticky-bulb__lightable-item--active");
});
menuContainer_items.click(function () {
var clickedItem = $(this);
var idx = Number(clickedItem.attr('data-menu-idx'));
carouselElem.carousel(idx - 1);
carouselElem.carousel('pause');
});
})
defer(function () {
var menuContainer = $("#homepage-products-block__sticky-element2");
var menuContainer_items = menuContainer.find(".sticky-bulb__lightable-item");
var carouselElem = $('#homepage-products-carousel2');
carouselElem.carousel()
carouselElem.carousel('pause');
carouselElem.on('slide.bs.carousel', function (e) {
var idx = $(e.relatedTarget).attr('data-menu-idx');
menuContainer_items.removeClass("sticky-bulb__lightable-item--active");
menuContainer_items.filter('[data-menu-idx=' + idx + ']').addClass("sticky-bulb__lightable-item--active");
});
menuContainer_items.click(function () {
var clickedItem = $(this);
var idx = Number(clickedItem.attr('data-menu-idx'));
carouselElem.carousel(idx - 1);
carouselElem.carousel('pause');
});
})
defer(function () {
var menuContainer = $("#homepage-products-block__sticky-element3");
var menuContainer_items = menuContainer.find(".sticky-bulb__lightable-item");
var carouselElem = $('#homepage-products-carousel3');
carouselElem.carousel()
carouselElem.carousel('pause');
carouselElem.on('slide.bs.carousel', function (e) {
var idx = $(e.relatedTarget).attr('data-menu-idx');
menuContainer_items.removeClass("sticky-bulb__lightable-item--active");
menuContainer_items.filter('[data-menu-idx=' + idx + ']').addClass("sticky-bulb__lightable-item--active");
});
menuContainer_items.click(function () {
var clickedItem = $(this);
var idx = Number(clickedItem.attr('data-menu-idx'));
carouselElem.carousel(idx - 1);
carouselElem.carousel('pause');
});
})
</script>
</body>