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build.xml
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<project name="Jmol" default="main" basedir=".">
<!--
DocumentId $Id: build.xml 21793 2018-01-02 16:58:31Z hansonr $
-->
<!--
see build.README.txt
-->
<!-- Contributions -->
<!-- <for list ...> construct needs ant-contrib.jar -->
<taskdef resource="net/sf/antcontrib/antlib.xml">
<classpath>
<pathelement location="tools/ant-contrib.jar" />
</classpath>
</taskdef>
<!-- pull developer-specific settings from their home directory -->
<property file="${user.home}/.jmol.build.properties" />
<!-- compile options -->
<property name="build.sysclasspath" value="ignore" />
<property name="build.compiler" value="javac1.8" />
<!-- for some reason, I can't get ant to use this ${java.version}
property as the value of the source parameter -->
<property name="java.version" value="1.8" />
<property name="debug" value="on" />
<property name="deprecation" value="off" />
<property name="optimization" value="off" />
<copy todir="" >
<fileset dir="src/org/jmol/viewer/">
<include name="Jmol.properties" />
</fileset>
<filterchain>
<striplinecomments>
<comment value="#" />
</striplinecomments>
<linecontains>
<contains value="Jmol.___" />
</linecontains>
</filterchain>
</copy>
<property file="Jmol.properties" prefix="Jmol.properties" />
<property name="version" value="${Jmol.properties.Jmol.___JmolVersion}" />
<propertyregex property="version"
override = "true"
input="${version}"
regexp='(")([^"]+)(")'
select="\2"
global="true"
/>
<echo message="version=${version}" />
<property name="jvxl_version" value="0.1" />
<!-- input message="private property file:" addproperty="Private.propertyFile" defaultValue="none" / -->
<property name="Private.propertyFile" value="none" />
<if><available file="${Private.propertyFile}" /><then>
<property file="${Private.propertyFile}" />
<echo>using ${Private.keystore} ${Private.storetype}</echo>
</then></if>
<property name="tests.source.dir" value="source-tests" />
<property name="lib.dir" value="jars" />
<property name="plugin.dir" value="plugin-jars" />
<property name="appjars.dir" value="build/appjars" />
<property name="classes.dir" value="build/classes" />
<property name="test-classes.dir" value="build/test-classes" />
<!-- property name="applet.classes.dir" value="build/applet-classes" / -->
<property name="apisio.classes.dir" value="build/apisio-classes" />
<property name="tests.dir" value="build/unit.tests" />
<property name="javadoc.dir" value="build/javadoc" />
<!-- property name="jmol.applet.web.dir" value="appletweb" / -->
<property name="docbook-xsl" value="docbook-xsl-1.76.1" />
<property name="docbook-xml" value="docbook-xml-4.4" />
<property name="naga.jar" value="naga-3_0.jar" />
<property name="commons-cli.jar" value="commons-cli-1.2.jar" />
<property name="inchi.jar" value="jni-inchi-0.7-jar-with-dependencies.jar" />
<property name="saxon.jar" value="saxon.jar" />
<property name="saxon.main" value="com.icl.saxon.StyleSheet" />
<property name="selfsign.store" value="ca-cert/selfSignedCertificate/selfSignedCertificate.store" />
<property name="selfsign.storetype" value="jks" />
<property name="selfsign.storepass" value="selfSignedCertificate" />
<property name="selfsign.alias" value="selfSignedCertificate" />
<property name="tsa.url" value="http://timestamp.globalsign.com/scripts/timestamp.dll" />
<!-- property name="tsa.url" value="http://tsa.starfieldtech.com" / -->
<!-- http://timestamp.globalsign.com/scripts/timestamp.dll or http://tsa.starfieldtech.com/, which stopped working 3/27/14 and again on 4/8/14 -->
<!-- you can set this by defining it in ~/.jmol.build.properties -->
<property name="keystore.name" value="Must be set by user." />
<!-- this value is required if you are building the .NET DLL, it must point to the IKVM/bin directory -->
<property name="ikvm.home" value="Must be set by user." />
<property file="proxy.properties" />
<import file="tools/build-i18n.xml"/>
<path id="project.class.path">
<fileset dir="${lib.dir}">
<include name="*.jar" />
</fileset>
</path>
<!-- path id="applet-project.class.path">
<fileset dir="${lib.dir}">
<include name="*.jar" />
</fileset>
</path -->
<path id="apisio-project.class.path">
<fileset dir="${lib.dir}">
<!-- include name="${vecmath.jar}" / -->
<!-- include name="netscape.jar" / -->
<include name="gnujaxp.jar" />
</fileset>
</path>
<target name="main" id="main" depends="init,jar"/>
<target name="all" id="all" depends="doc,main"/>
<target name="init" id="init">
<tstamp/>
</target>
<target name="initFailure" id="initFailure">
<fail message="Init failed. See messages above." />
</target>
<target name="setup" id="setup">
<condition property="docbook-xsl.uptodate">
<and>
<uptodate targetfile="build/${docbook-xsl}"
srcfile="doc/${docbook-xsl}.tar.gz" />
<uptodate targetfile="build/${docbook-xsl}.timestamp"
srcfile="build/${docbook-xsl}" />
</and>
</condition>
<condition property="docbook-xml.uptodate">
<and>
<uptodate targetfile="build/docbook-xml"
srcfile="doc/${docbook-xml}.zip" />
<uptodate targetfile="build/docbook-xml.timestamp"
srcfile="build/docbook-xml" />
</and>
</condition>
<condition property="jmolGuide.uptodate">
<and>
<uptodate targetfile="build/doc/JmolUserGuide/index.html">
<srcfiles dir="doc/source"
includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">
<srcfiles dir="doc/source"
includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>
</uptodate>
</and>
</condition>
<condition property="jmolHistory.uptodate">
<and>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog.html">
<srcfiles dir="doc/source"
includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />
</uptodate>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">
<srcfiles dir="doc/source"
includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />
</uptodate>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">
<srcfiles dir="doc/source"
includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />
</uptodate>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog_ro.html">
<srcfiles dir="doc/source"
includes="JmolHistory_ro.xml,JmolHistoryToHtml.xsl,history/changes_ro.xml" />
</uptodate>
</and>
</condition>
<condition property="jmolDevelopersGuide.uptodate">
<and>
<uptodate targetfile="build/doc/JmolDevelopersGuide.html">
<srcfiles dir="doc/source"
includes="JmolDevelopersGuide.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">
<srcfiles dir="doc/source"
includes="JmolDevelopersGuide_fr.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">
<srcfiles dir="doc/source"
includes="JmolDevelopersGuide_de.docbook.xml"/>
</uptodate>
</and>
</condition>
<condition property="jmolAppletGuide.uptodate">
<and>
<uptodate targetfile="build/doc/JmolAppletGuide.html">
<srcfiles dir="doc/source"
includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolAppletGuide_fr.html">
<srcfiles dir="doc/source"
includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolAppletGuide_de.html">
<srcfiles dir="doc/source"
includes="JmolAppletGuide_de.docbook.xml"/>
</uptodate>
</and>
</condition>
<available classname="${saxon.main}"
classpath="${lib.dir}/${saxon.jar}"
property="xsl.available"/>
<uptodate property="javadoc.uptodate" targetfile="${javadoc.dir}/index.html">
<srcfiles dir="src" includes="**/*.java, **/*.html" />
</uptodate>
<available file="${keystore.name}" property="keystore.present" />
<!-- Optional proxy settings (if defined) -->
<condition property="proxyHost"
value="-Dhttp.proxyHost=${http.proxyHost}" >
<not>
<equals arg1="http.proxyHost" arg2="" />
</not>
</condition>
<condition property="proxyPort"
value="-Dhttp.proxyPort=${http.proxyPort}" >
<not>
<equals arg1="http.proxyPort" arg2="" />
</not>
</condition>
</target>
<target id="classes" name="classes" depends="init">
<mkdir dir="${classes.dir}"/>
<javac srcdir="src" destdir="${classes.dir}" encoding="UTF8"
debug="${debug}" deprecation="${deprecation}"
optimize="${optimization}" source="1.8" target="1.8">
<classpath refid="project.class.path" />
<exclude name="astex/**/*.java"/>
<exclude name="java_cup/**/*.java"/>
</javac>
<copy todir="${classes.dir}" >
<fileset dir="src">
<include name="**/license.txt" />
<include name="**/*.jpg" />
<include name="**/*.gif" />
<include name="**/*.po" />
<include name="**/*.png" />
<include name="**/*.html" />
<include name="**/*.js" />
<include name="**/*.dtd" />
<include name="**/*.properties" />
<include name="**/Properties/*" />
<!-- for testing internationalisation only:
comment out the 2 lines above and uncomment the following 3 lines -->
<!--
<include name="**/JmolPop*.properties" />
<include name="**/Properties/Jmol.properties" />
<include name="**/Properties/Jmol-resources.properties" />
-->
<include name="**/Data/*" />
<include name="**/*.txt" />
</fileset>
</copy>
<copy file="Jmol.properties" tofile="${classes.dir}/org/jmol/viewer/Jmol.properties" />
</target>
<target name="applet-classes" id="applet-classes" depends="init">
<mkdir dir="${applet.classes.dir}"/>
<copy todir="${applet.classes.dir}" >
<fileset dir="src">
<include name="org/jmol/modelkit/images/*" />
</fileset>
</copy>
<property name="build.compiler" value="javac1.8" />
<!--
bh 20220215 changed to 1.8, 1.8
bh 20131124 changed to 1.6, 1.6
mth 20040713 ... with the Sun Java 1.5 compiler the default
source code version is 1.5. And one cannot generate code for
a 1.1 virtual machine from 1.5 source. Therefore, in order to
compile for the 1.1 jvm, we need to specify that the source
version is 1.3. (Note that we cannot use source=1.4 because
of assertions)
miguel 20041121
I do not know recall exactly what I meant by the statement
in (parentheses) above. I *think* that what I was saying
is that if you say 'source=1.4' then one also cannot
generate code for a 1.1 jvm, because of the special
support for assertions (which were introduced in 1.4).
bob 2010.02.01
changed source="1.3" target="1.1"
to source="1.4" target="1.4"
bob 2010.04.29
in order to allow for faster BitSet methods
changed source="1.4" target="1.4"
to source="1.5" target="1.5"
bob 2010.05.19
changed just the applet classes back to:
source="1.4" target="1.4"
all support for previous versions removed
-->
<javac srcdir="src" destdir="${applet.classes.dir}"
debug="${debug}" deprecation="${deprecation}"
optimize="${optimization}"
source="1.8" target="1.8" encoding="UTF8"
includesfile="applet.classes"
classpathref="applet-project.class.path" />
<copy todir="${applet.classes.dir}" >
<fileset dir="src">
<include name="org/jmol/minimize/forcefield/data/*.txt" />
<include name="jmol75x29x8.gif" />
</fileset>
</copy>
<copy todir="${applet.classes.dir}" >
<fileset dir="src">
<include name="org/jmol/quantum/*.txt" />
</fileset>
</copy>
<copy file="Jmol.properties" tofile="${applet.classes.dir}/org/jmol/viewer/Jmol.properties" />
<copy todir="${applet.classes.dir}" >
<fileset dir="${classes.dir}">
<include name="**/JmolApplet/*/*.class" />
</fileset>
<fileset dir="src">
<include name="**/license.txt" />
</fileset>
</copy>
</target>
<target name="apisio-classes" id="apisio-classes" depends="init">
<mkdir dir="${apisio.classes.dir}"/>
<javac srcdir="src" destdir="${apisio.classes.dir}"
debug="${debug}" deprecation="${deprecation}"
optimize="${optimization}" source="1.8" encoding="UTF8"
includesfile="apisio.classes"
classpathref="apisio-project.class.path" />
<copy todir="${apisio.classes.dir}" >
<fileset dir="src">
<include name="**/g3d/*.html" />
</fileset>
</copy>
</target>
<target name="check.cdkjars" id="check.cdkjars">
<condition property="cdkjars.uptodate">
<and>
<uptodate targetfile="${appjars.dir}/org/openscience/cdk">
<srcfiles dir="${lib.dir}" includes="jmol2cdk.jar"/>
</uptodate>
<uptodate targetfile="build/cdkjars.timestamp"
srcfile="${appjars.dir}/org/openscience/cdk"/>
</and>
</condition>
</target>
<target name="check.pluginjars" id="check.pluginjars">
<condition property="pluginjars.uptodate">
<and>
<uptodate targetfile="${appjars.dir}/org/openscience/cdkplugin">
<srcfiles dir="${plugin.dir}" includes="dirbrowser.jar"/>
<srcfiles dir="${plugin.dir}" includes="dadmlbrowser.jar"/>
</uptodate>
<uptodate targetfile="build/pluginjars.timestamp"
srcfile="${appjars.dir}/org/openscience/cdkplugin"/>
</and>
</condition>
</target>
<target name="check.libjars" id="check.libjars">
<condition property="libjars.uptodate">
<and>
<uptodate targetfile="${appjars.dir}">
<srcfiles dir="${lib.dir}" includes="${naga.jar}"/>
<srcfiles dir="${lib.dir}" includes="${commons-cli.jar}"/>
<srcfiles dir="${lib.dir}" includes="${inchi.jar}"/>
</uptodate>
<uptodate targetfile="build/libjars.timestamp"
srcfile="${appjars.dir}"/>
</and>
</condition>
</target>
<!-- target name="appjars" id="appjars" depends="libjars, cdkjars, pluginjars"/>
<target name="cdkjars" id="cdkjars" depends="check.cdkjars" unless="cdkjars.uptodate">
<delete file="build/cdkjars.timestamp"/>
<mkdir dir="${appjars.dir}"/>
<unjar dest="${appjars.dir}" src="${lib.dir}/jmol2cdk.jar"/>
<touch file="build/cdkjars.timestamp"/>
</target>
<target name="pluginjars" id="pluginjars" depends="check.pluginjars" unless="pluginjars.uptodate">
<delete file="build/pluginjars.timestamp"/>
<mkdir dir="${appjars.dir}"/>
<unjar dest="${appjars.dir}" src="${plugin.dir}/dirbrowser.jar"/>
<unjar dest="${appjars.dir}" src="${plugin.dir}/dadmlbrowser.jar"/>
<touch file="build/pluginjars.timestamp"/>
</target -->
<target name="libjars" id="libjars" depends="check.libjars" unless="libjars.uptodate">
<delete file="build/libjars.timestamp"/>
<mkdir dir="${appjars.dir}"/>
<!-- unjar dest="${appjars.dir}" src="${lib.dir}/${vecmath.jar}"/ -->
<!-- unjar dest="${appjars.dir}" src="${lib.dir}/Acme.jar"/ -->
<!-- unjar dest="${appjars.dir}" src="${lib.dir}/${itext.jar}"/ -->
<unjar dest="${appjars.dir}" src="${lib.dir}/${naga.jar}"/>
<unjar dest="${appjars.dir}" src="${lib.dir}/${commons-cli.jar}"/>
<delete dir="${appjars.dir}/javajs" />
<delete dir="${appjars.dir}/org/jmol" />
<delete dir="${appjars.dir}/org/apache/tools" />
<delete dir="${appjars.dir}/META-INF" />
<unjar dest="${appjars.dir}" src="${lib.dir}/${inchi.jar}"/>
<move file="${appjars.dir}/META-INF/LICENSE" tofile="${appjars.dir}/META-INF/LICENSE-JNI-INCHI"/>
<delete file="${appjars.dir}/META-INF/MANIFEST.MF" />
<!-- the following mitigation is in accord with https://logging.apache.org/log4j/2.x/security.html
despite the fact that the org/apache/logging package is not included in Jmol.
It is added here in case JNI-InChI is ever upgraded to Log4J2 (which requires Java 7+) -->
<delete file="${appjars.dir}/org/apache/logging/log4j/core/lookup/JndiLookup.class" />
<touch file="build/libjars.timestamp"/>
</target>
<target name="jar" id="jar"
depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n">
<if><equals arg1="${Private.propertyFile}" arg2="nojar" />
<then><echo>Skipping jar creation</echo></then><else>
<copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >
<fileset dir="build/doc/JmolUserGuide">
<include name="**/*.html" />
</fileset>
</copy>
<copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >
<fileset dir="build/doc/JmolUserGuide_fr">
<include name="**/*.html" />
</fileset>
</copy>
<copy todir="${classes.dir}/org/openscience/jmol/Data" >
<fileset dir="build/doc/JmolHistory">
<include name="**/*.html" />
</fileset>
</copy>
<echo message="Creating JmolD.jar -- if this fails, check to see that build/JmolD.jar is not open." />
<jar destfile="build/JmolD.jar"
manifest="manifest/application.txt">
<fileset dir="${classes.dir}" >
<exclude name="**/.*" />
<exclude name="**/*.dx" />
<exclude name="ant/**" />
<include name="com/**" />
<include name="net/sf/**" />
<include name="javajs/api/**" />
<include name="javajs/awt/**" />
<include name="javajs/export/**" />
<include name="javajs/img/**" />
<include name="javajs/util/**" />
<include name="**/jspecview/**" />
<include name="jme/**" />
<include name="**/org/gennbo/**" />
<include name="**/org/apache/**" />
<include name="**/org/qcschema/**" />
<include name="**/jmol/**" />
<exclude name="**/Test*.class" />
<exclude name="**/jmol/jcamp/**" />
<exclude name="**/jmol/applet/*" />
<exclude name="**/app/JmolData.class" />
</fileset>
<fileset dir="${appjars.dir}" includes="**/*"/>
</jar>
<antcall target="sign-jar-file">
<param name="sign-jar-file-dir" value="build" />
<param name="sign-jar-file-name" value="JmolD.jar" />
</antcall>
<echo message="Creating JmolDataD.jar -- if this fails, check to see that build/JmolD.jar is not open." />
<jar destfile="build/JmolDataD.jar"
manifest="manifest/applicationData.txt">
<fileset dir="${classes.dir}" >
<exclude name="**/Test*.class" />
<exclude name="**/jmol/jcamp/**" />
<exclude name="**/jmol/applet/*" />
<exclude name="**/.*" />
<exclude name="**/*.dx" />
<exclude name="**/Test*.class" />
<exclude name="ant/**" />
<exclude name="com/**" />
<include name="net/sf/**" />
<include name="javajs/api/**" />
<include name="javajs/awt/**" />
<include name="javajs/export/**" />
<include name="javajs/img/**" />
<include name="javajs/util/**" />
<include name="**/jspecview/**" />
<include name="**/org/gennbo/**" />
<include name="**/org/apache/**" />
<include name="**/org/qcschema/**" />
<include name="**/jmol/**" />
<exclude name="**/jmol/_documents/**" />
<exclude name="**/jmol/applet/**" />
<exclude name="**/jmol/*js/**" />
<exclude name="**/jmol/console/**" />
<exclude name="**/jmol/popup/**" />
<exclude name="org/jmol/util/BitSet32.class" />
<exclude name="**/openscience/jmol/Data/**" />
<exclude name="**/openscience/jmol/app/Jmol.class" />
<exclude name="**/openscience/jmol/app/images/**" />
<exclude name="**/openscience/jmol/app/jmolpanel/**" />
<exclude name="**/openscience/jmol/app/webexport/**" />
</fileset>
<fileset dir="${appjars.dir}" includes="**/*"/>
</jar>
<antcall target="sign-jar-file">
<param name="sign-jar-file-dir" value="build" />
<param name="sign-jar-file-name" value="JmolDataD.jar" />
</antcall>
<copy todir="build">
<fileset dir=".">
<include name="jmolD" />
<include name="jmolD.bat" />
<include name="jmolD.sh" />
</fileset>
</copy>
<jar destfile="build/Jvxl.jar"
manifest="manifest/jvxl.txt">
<fileset dir="${classes.dir}" >
<exclude name="**/.*" />
<exclude name="**/*.dx" />
<exclude name="**/Test*.class" />
<include name="org/openscience/jvxl/*" />
<include name="org/jmol/api/**" />
<include name="org/jmol/atomdata/**" />
<include name="org/jmol/c/**" />
<include name="org/jmol/g3d/**" />
<include name="org/jmol/jvxl/**" />
<include name="org/jmol/io/**" />
<include name="org/jmol/util/**" />
<include name="org/jmol/viewer/JmolConstants.class" />
</fileset>
<fileset dir="${appjars.dir}" includes="**/*"/>
</jar>
<antcall target="sign-jar-file">
<param name="sign-jar-file-dir" value="build" />
<param name="sign-jar-file-name" value="Jvxl.jar" />
</antcall>
</else></if>
</target>
<target name="apis-jar" id="apis-jar" depends="init,apisio-classes">
<jar destfile="jmolApis.jar">
<fileset dir="${apisio.classes.dir}" >
<include name="org/jmol/api/**" />
</fileset>
<fileset dir="." >
<include name="LICENSE.txt"/>
</fileset>
</jar>
</target>
<target name="io-jar" id="io-jar" depends="init,apisio-classes">
<jar destfile="jmolIO.jar">
<fileset dir="${apisio.classes.dir}" >
<include name="org/jmol/adapter/smarter/**" />
</fileset>
<fileset dir="." >
<include name="LICENSE.txt"/>
</fileset>
</jar>
</target>
<!-- target name="applet-jar" id="applet-jar"
depends="applet-classes">
<if><equals arg1="${Private.propertyFile}" arg2="none" />
<then><echo>Skipping applet-jar</echo></then><else>
<delete dir="build">
<include name="JmolApplet*"/>
</delete>
<echo message="Creating JmolApplet.jar" />
<jar destfile="build/JmolApplet.jar"
manifest="manifest/appletMonolithic.txt" index="true" >
<fileset dir="${applet.classes.dir}" >
<include name="**/*" />
<exclude name="JmolSmiles*" />
<exclude name="org/jmol/dialog/**/*" />
<exclude name="org/jmol/export/**/*" />
<exclude name="org/jmol/multitouch/**/*" />
<exclude name="org/openscience/**/*" />
<exclude name="com/sparshui/**/*" />
<exclude name="com/json/**/*" />
</fileset>
</jar>
<echo message="Creating JmolApplet0*.jar" />
<jar destfile="build/JmolApplet0_Image.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/dialog/**" />
<include name="org/jmol/image/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/minimize/**/**" />
<include name="org/jmol/modelkit/images/**" />
<include name="org/jmol/modelkit/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Navigate.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/navigate/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Console.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/console/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_JSV.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/jsv/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Popup.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/popup/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersMolXyz.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/spartan/**" />
<include name="org/jmol/adapter/readers/molxyz/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersCif.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/cif/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersPdb.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/pdb/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersQuantum.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/quantum/**" />
<include name="org/jmol/quantum/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersPyMOL.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/pymol/**" />
<include name="org/jmol/rendercgo/**" />
<include name="org/jmol/shapecgo/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersMore.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/more/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersSimple.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/simple/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersXtal.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/xtal/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersXml.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/xml/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ScriptExt.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/scriptext/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ShapeBio.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/modelsetbio/**" />
<include name="org/jmol/dssx/**" />
<include name="org/jmol/renderbio/**" />
<include name="org/jmol/shapebio/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ShapeSpecial.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/renderspecial/**" />
<include name="org/jmol/shapespecial/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ShapeSurface.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/jvxl/**" />
<include name="org/jmol/shapesurface/**" />
<include name="org/jmol/rendersurface/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Smiles.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/smiles/**" />
</fileset>
</jar>
< ! - -
<jar destfile="build/JmolApplet0_Spectrum.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/spectrum/**" />
</fileset>
</jar>
- - >
<jar destfile="build/JmolApplet0_Symmetry.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/symmetry/**" />
</fileset>
</jar>
< ! - - changes to this must be replicated below for the signed applet - - >
<jar destfile="build/JmolApplet0.jar" manifest="manifest/applet0.txt"
index="true" >
<fileset dir="${applet.classes.dir}">
<include name="JmolApplet*.class" />
<include name="jmol75x29x8.gif" />
<include name="javajs/api/**" />
<include name="javajs/awt/**" />
<include name="javajs/img/**" />
<include name="javajs/export/**" />
<include name="javajs/util/**" />
<include name="org/jmol/adapter/smarter/**" />
<include name="org/jmol/api/**" />
<include name="org/jmol/applet/**" />
<include name="org/jmol/atomdata/**" />
<include name="org/jmol/awt/**" />
<include name="org/jmol/bspt/**" />
<include name="org/jmol/c/**" />
<include name="org/jmol/g3d/**" />
<include name="org/jmol/geodesic/**" />
<include name="org/jmol/i18n/**" />
<include name="org/jmol/java/**" />
<include name="org/jmol/modelset/**" />
<include name="org/jmol/script/**" />
<include name="org/jmol/shape/**" />
<include name="org/jmol/render/**" />
<include name="org/jmol/thread/**" />
<include name="org/jmol/util/**" />
<include name="org/jmol/io/**" />
<exclude name="org/jmol/util/BitSet32.class" />
<include name="org/jmol/viewer/**" />
</fileset>
< ! - - changes to this must be replicated below for the all-permissions applet - - >
<indexjars>
< ! - - no export or multitouch here - this is the sandboxed applet - - >
<pathelement path="build/JmolApplet0_Console.jar" />
<pathelement path="build/JmolApplet0_Image.jar" />
<pathelement path="build/JmolApplet0_JSV.jar" />
<pathelement path="build/JmolApplet0_Minimize.jar" />
<pathelement path="build/JmolApplet0_Navigate.jar" />
<pathelement path="build/JmolApplet0_Popup.jar" />
<pathelement path="build/JmolApplet0_ReadersCif.jar" />
<pathelement path="build/JmolApplet0_ReadersPdb.jar" />
<pathelement path="build/JmolApplet0_ReadersMolXyz.jar" />
<pathelement path="build/JmolApplet0_ReadersMore.jar" />
<pathelement path="build/JmolApplet0_ReadersQuantum.jar" />
<pathelement path="build/JmolApplet0_ReadersPyMOL.jar" />
<pathelement path="build/JmolApplet0_ReadersSimple.jar" />
<pathelement path="build/JmolApplet0_ReadersXml.jar" />
<pathelement path="build/JmolApplet0_ReadersXtal.jar" />
<pathelement path="build/JmolApplet0_ScriptExt.jar" />
<pathelement path="build/JmolApplet0_ShapeBio.jar" />
<pathelement path="build/JmolApplet0_ShapeSpecial.jar" />
<pathelement path="build/JmolApplet0_ShapeSurface.jar" />
<pathelement path="build/JmolApplet0_Smiles.jar" />
<pathelement path="build/JmolApplet0_Symmetry.jar" />
< ! - - <pathelement path="build/JmolApplet0_Spectrum.jar" />
<fileset dir="build" includes="JmolApplet0_i18n_*.jar" /> - - >
</indexjars>
</jar>
</else></if>
</target>
<target name="signed-applet" id="signed-applet" depends="applet-jar">
<if><equals arg1="${Private.propertyFile}" arg2="none" />
<then><echo>Skipping applet jar signing</echo></then><else>
<delete dir="build">
<include name="JmolAppletSigned*"/>
</delete>
<echo message="Creating JmolAppletSigned.jar" />
<jar destfile="build/JmolAppletSigned.jar"
manifest="manifest/appletMonolithicSigned.txt" index="true" >
<fileset dir="${applet.classes.dir}" >
<include name="**/*" />
<exclude name="JmolSmiles*" />
<exclude name="javajs/swing/**" />
<exclude name="org/openscience/**/*" />
</fileset>
</jar>
<echo message="Creating JmolAppletsigned0*.jar" />
<jar destfile="build/JmolAppletSigned0_Console.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/console/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Image.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/dialog/**" />
<include name="org/jmol/image/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_JSV.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/jsv/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Minimize.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/minimize/**/**" />
<include name="org/jmol/modelkit/**" />
<include name="org/jmol/modelkit/images/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_MultiTouch.jar"
manifest="manifest/appletSigned.txt" index="true" >
<fileset dir="${applet.classes.dir}" >
<include name="org/jmol/multitouch/**" />
<include name="com/sparshui/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Navigate.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/navigate/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Popup.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/popup/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersMolXyz.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/spartan/**" />
<include name="org/jmol/adapter/readers/molxyz/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersCif.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/cif/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersPdb.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/pdb/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersMore.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/more/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersQuantum.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/quantum/**" />
<include name="org/jmol/quantum/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersPyMOL.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/pymol/**" />
<include name="org/jmol/rendercgo/**" />
<include name="org/jmol/shapecgo/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersSimple.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/simple/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersXtal.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/xtal/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersXml.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/xml/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ScriptExt.jar" manifest="manifest/appletSigned.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/scriptext/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ShapeBio.jar" manifest="manifest/appletSigned.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/modelsetbio/**" />
<include name="org/jmol/dssx/**" />
<include name="org/jmol/shapebio/**" />
<include name="org/jmol/renderbio/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ShapeSpecial.jar" manifest="manifest/appletSigned.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/shapespecial/**" />
<include name="org/jmol/renderspecial/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ShapeSurface.jar" manifest="manifest/appletSigned.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/jvxl/**" />
<include name="org/jmol/shapesurface/**" />
<include name="org/jmol/rendersurface/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Smiles.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/smiles/**" />
</fileset>
</jar>
< ! - -
<jar destfile="build/JmolAppletSigned0_Spectrum.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/spectrum/**" />
</fileset>