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supp3_BC.R
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rm(list=ls());
source("supp_func.R");
pdf("supp3_BC.pdf", 16, 8);
layout(matrix(c(1,2), nrow = 1, ncol = 2, byrow = TRUE))
par(mar=c(1,1,1,1));
dat1 <- read.table("../data/01/03clust_table_cluID.txt", header=T);
dat2 <- read.table("../data/01/03clust_table_cluNum.txt", header=T);
# Plot 20 - 40 clusters
clu.n <- seq(20, 40, length.out = 21);
clu.n <- paste0("clu", clu.n);
clu.i <- which(colnames(dat1) %in% clu.n)
dat1 <- dat1[,clu.i];
dat2 <- dat2[,clu.i];
num <- seq(20, 40, length.out=21);
r0 <- seq(100, 400, length.out=21);
col0 <- rainbow(10, alpha=0.8);
plot(c(1,800), c(1,800), type="n", axes=F, xlab="", ylab="");
## plot segments
for (i in 1:ncol(dat1)){
n <- num[i];
r <- r0[i];
s.w <- 360 - angle(400+50, 400+r, 400, 400)$degree;
e.w <- 2*360 - angle(400-50, 400+r, 400, 400)$degree;
out <- n2p(400, 400, r, n, start.w=s.w, end.w=e.w);
clu.m <- max(dat1[,i]);
if (i > 1){
for (clu.i in 1:clu.m){
j.i <- which(dat1[,i]==clu.i);
i1.i <- i - 1;
p.c <- dat1[j.i, i1.i];
p.c <- unique(p.c);
for (p.i in p.c){
x1 <- out$x[clu.i];
y1 <- out$y[clu.i];
x0 <- oldx[p.i];
y0 <- oldy[p.i];
segments(x0, y0, x1, y1, col=col0[7], lwd=0.2);
}
}
}
oldx <- out$x;
oldy <- out$y;
}
## plot points
for (i in 1:ncol(dat1)){
n <- num[i];
r <- r0[i];
s.w <- 360 - angle(400+50, 400+r, 400, 400)$degree;
e.w <- 2*360 - angle(400-50, 400+r, 400, 400)$degree;
out <- n2p(400, 400, r, n, start.w=s.w, end.w=e.w);
text(400, 825, "Cluster Number");
text(400, 400+r, paste0("", n), cex=0.9);
clu.m <- max(dat1[,i]);
cex <- NULL;
for (j in 1:clu.m){
k <- which(dat1[,i]==j);
n <- sum(dat2[k,i]);
n <- log2(n)/6;
cex <- c(cex, n);
}
cols <- rainbow(clu.m, alpha=0.6);
points(out$x, out$y, pch=19, col="white", cex=cex+0.1);
points(out$x, out$y, pch=19, col=cols, cex=cex);
oldx <- out$x;
oldy <- out$y;
}
fig_label('B', pos='topleft',cex=5)
# Plot clusters 100 -1000
dat1 <- read.table("../data/01/03clust_table_cluID.txt", header=T);
dat2 <- read.table("../data/01/03clust_table_cluNum.txt", header=T);
clu.n <- seq(100, 1000, length.out = 10);
clu.n <- paste0("clu", clu.n);
clu.i <- which(colnames(dat1) %in% clu.n)
dat1 <- dat1[,clu.i];
dat2 <- dat2[,clu.i];
num <- seq(100, 1000, length.out=10);
r0 <- seq(100, 400, length.out=10);
col0 <- rainbow(10, alpha=0.8);
plot(c(1,800), c(1,800), type="n", axes=F, xlab="", ylab="");
## plot segments
for (i in 1:ncol(dat1)){
n <- num[i];
r <- r0[i];
s.w <- 360 - angle(400+50, 400+r, 400, 400)$degree;
e.w <- 2*360 - angle(400-50, 400+r, 400, 400)$degree;
out <- n2p(400, 400, r, n, start.w=s.w, end.w=e.w);
clu.m <- max(dat1[,i]);
if (i > 1){
for (clu.i in 1:clu.m){
j.i <- which(dat1[,i]==clu.i);
i1.i <- i - 1;
p.c <- dat1[j.i, i1.i];
p.c <- unique(p.c);
for (p.i in p.c){
x1 <- out$x[clu.i];
y1 <- out$y[clu.i];
x0 <- oldx[p.i];
y0 <- oldy[p.i];
segments(x0, y0, x1, y1, col=col0[7], lwd=0.2);
}
}
}
oldx <- out$x;
oldy <- out$y;
}
## plot points
for (i in 1:ncol(dat1)){
n <- num[i];
r <- r0[i];
s.w <- 360 - angle(400+50, 400+r, 400, 400)$degree;
e.w <- 2*360 - angle(400-50, 400+r, 400, 400)$degree;
out <- n2p(400, 400, r, n, start.w=s.w, end.w=e.w);
text(400, 825, "Cluster Number");
text(400, 400+r, paste0("", n), cex=0.9);
clu.m <- max(dat1[,i]);
cex <- NULL;
for (j in 1:clu.m){
k <- which(dat1[,i]==j);
n <- sum(dat2[k,i]);
n <- log2(n)/30;
cex <- c(cex, n);
}
cols <- rainbow(clu.m, alpha=0.6);
points(out$x, out$y, pch=19, col="white", cex=cex+0.1);
points(out$x, out$y, pch=19, col=cols, cex=cex);
oldx <- out$x;
oldy <- out$y;
}
fig_label('C', pos='topleft',cex=5)
dev.off();