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Is there a more friendly tutorial vignette starting with a seurat object? #1

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levinhein opened this issue Jul 1, 2022 · 1 comment
Open

Is there a more friendly tutorial vignette starting with a seurat object? #1

levinhein opened this issue Jul 1, 2022 · 1 comment

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@levinhein
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levinhein commented Jul 1, 2022 •
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Hello. Thank you for developing a very amazing tool that is way better than others. I'm very interested to use and cite your work for my projects.

I just wonder if there is any available external tutorial/vignette somewhere that can be easily followed step-by-step starting from a seurat object? I'm kind of confused with the actual codes here in Github. Maybe something that used the built-in seurat object pbmc3k as demonstration that everyone can follow?

I'm struggling how to implement it with my actual data. Given my integrated seurat object, I subset one kind of cell type, then do I start with #4 "Graphical based k-partitioning approach"?

Thank you very much in advance.
@levinhein levinhein changed the title Is there a more friendly tutorial vignetter starting with a seurat object? Is there a more friendly tutorial vignette starting with a seurat object? Jul 7, 2022
@CBIIT-CGBB
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The test_Seurat_Object.R was added into test. Please re-install scCorr and test the code. Thanks
Ying

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@CBIIT-CGBB @levinhein