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Identifying Within Pathway Modules (WPM) and Between Pathway Modules (BPM) #2

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abearab opened this issue Oct 7, 2023 · 0 comments
Open

Identifying Within Pathway Modules (WPM) and Between Pathway Modules (BPM) #2

abearab opened this issue Oct 7, 2023 · 0 comments

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@abearab
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abearab commented Oct 7, 2023 •
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Steps:

  • decompose graph into components
  • identify pathway-gene-pathway and pathway-gene relationships
  • define rules to extract pathway level modules
  • annotations for pathway level known or rewired genetic interactions

Between Pathway Modules (BPM):

  • pathway-gene-pathway relationships for genes interacting within sub-network of linked pathways

Within Pathway Modules (WPM):

  • pathway-gene relationships for genes interacting within a single pathway
@abearab abearab mentioned this issue Oct 7, 2023
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