Failing in amp_analysis stage

[MaestSi]

Although in the mass_select stage the final score for each of the assemblers run is correctly evaluated (so the file "weightings.tab" is correctly read in this stage), in rampart_out/8_amp_analysis/scores.tsv all the group scores are equal to 0.0 (also the ones for amp-stage-0, which are not equal to 0 in rampart_out/6_mass_select/scores.tsv).
Is there an issue in the reading of the "weightings.tab" file in the amp_analysis stage?
Thanks

[maplesond]

Yes the full calculation for the assembly scores for the amp stage was never implemented. Ideally I wanted to modify the amp stage to allow for testing of multiple tools and parameters similar to the MASS stage.

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-------- Original message --------
From: MaestSi [email protected]
Date: 17/05/2016 11:37 (GMT+00:00)
To: TGAC/RAMPART [email protected]
Subject: [TGAC/RAMPART] RAMPART failing in amp_analysis stage (#27)

Although in the mass_select stage the final score for each of the assemblers run is correctly evaluated (so the file "weightings.tab" is correctly read in this stage), in rampart_out/8_amp_analysis/scores.tsv all the group scores are equal to 0.0 (also the ones for amp-stage-0, which are not equal to 0 in rampart_out/6_mass_select/scores.tsv).
Is there an issue in the reading of the "weightings.tab" file in the amp_analysis stage?
Thanks

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