environment.yml

name: CondaGenetics
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- aragorn=1.2.36=1
- barrnap=0.8=0
- blast=2.6.0=boost1.61_1
- bwa=0.7.15=1
- freebayes=1.1.0=py35_0
- hmmer=3.1b2=3
- infernal=1.1.2=0
- jemalloc=4.5.0=0
- libidn=7.45.0=1
- minced=0.2.0=1
- parallel=20170422=pl5.22.0_0
- perl-bioperl=1.6.924=4
- perl-digest-hmac=1.03=pl5.22.0_1
- perl-encode-locale=1.05=pl5.22.0_4
- perl-exporter-tiny=0.042=1
- perl-file-listing=6.04=0
- perl-html-parser=3.72=pl5.22.0_1
- perl-html-tagset=3.20=pl5.22.0_1
- perl-http-cookies=6.01=0
- perl-http-daemon=6.01=0
- perl-http-date=6.02=pl5.22.0_1
- perl-http-message=6.11=0
- perl-http-negotiate=6.01=0
- perl-io-html=1.001=pl5.22.0_1
- perl-io-socket-ssl=2.024=0
- perl-libwww-perl=6.15=0
- perl-list-moreutils=0.413=1
- perl-lwp-mediatypes=6.02=pl5.22.0_1
- perl-net-http=6.09=0
- perl-net-ssleay=1.74=0
- perl-ntlm=1.09=1
- perl-threaded=5.22.0=pl5.22.0_12
- perl-uri=1.71=0
- perl-vcftools-vcf=0.953=3
- perl-www-robotrules=6.02=0
- perl-xml-namespacesupport=1.11=0
- perl-xml-parser=2.44=4
- perl-xml-sax=0.99=0
- perl-xml-sax-base=1.08=0
- perl-xml-sax-expat=0.51=0
- perl-xml-simple=2.22=0
- perl-yaml=1.18=0
- prodigal=2.6.3=0
- prokka=1.12=3
- samtools=1.5=1
- snippy=3.1=pl5.22.0_3
- snpeff=4.3.1q=0
- spades=3.10.1=py35_0
- tbl2asn=25.3=0
- trimmomatic=0.36=5
- vcflib=1.0.0_rc1=0
- vcftools=0.1.14=5
- boost=1.61.0=py35_1
- bzip2=1.0.6=1
- ca-certificates=2017.7.27.1=0
- certifi=2017.7.27.1=py35_0
- curl=7.54.1=0
- expat=2.2.1=0
- gmp=6.1.2=0
- icu=56.1=4
- krb5=1.14.2=0
- libssh2=1.8.0=1
- ncurses=5.9=10
- nodejs=6.11.0=0
- openssl=1.0.2l=0
- perl=5.22.0.1=0
- pip=9.0.1=py35_0
- python=3.5.4=0
- readline=6.2=0
- ruby=2.3.3=0
- setuptools=36.3.0=py35_0
- sqlite=3.13.0=1
- tk=8.5.19=2
- wheel=0.29.0=py35_0
- xz=5.2.3=0
- yaml=0.1.6=0
- zlib=1.2.8=3
- libgcc=5.2.0=0
- openjdk=8.0.121=1
prefix: /home/eklavya/.conda/envs/CondaGenetics