Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feature_select blocklist parameter might not work for all datasets #511

Open
jenna-tomkinson opened this issue Feb 7, 2025 · 0 comments
Labels
bug Something isn't working question Further information is requested

Comments

@jenna-tomkinson
Copy link
Member

After reviewing the blocklist.txt file, I noticed that the CellProfiler features were hardcoded for specific naming conventions for the channels (e.g., DNA, AGP, RNA`).

If someone were to name their channel Hoechst instead of DNA, wouldn't that mean that this file would not work if called?

Would it make more sense to change this default blocklist to avoid the features themselves (e.g., Manders, RWC, and Nuclei Granularity)?

Is there any documentation on why these features were selected as default if you use this operation?

I am hoping more clarity on this file will provide better guidance for processing my datasets.

@jenna-tomkinson jenna-tomkinson added bug Something isn't working question Further information is requested labels Feb 7, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working question Further information is requested
Projects
None yet
Development

No branches or pull requests

1 participant