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How can specific sequences from metagenomes be extracted for further analysis? #86

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kternus opened this issue Jun 9, 2018 · 1 comment
Open

How can specific sequences from metagenomes be extracted for further analysis? #86

kternus opened this issue Jun 9, 2018 · 1 comment
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@kternus
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kternus commented Jun 9, 2018

Could we add instructions in dahak for how users could extract specific sequences from metagenomes for further analysis?

@ctb recommended identifying the reference sequence of interest after using sourmash on a metagenome, selecting the reference sequence, and then mapping reads from the metagenome to the selected reference sequence.
@brooksph
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We're working on some scripts for this analysis and should make sure to include this as a future direction in the base year report.

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