Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Installation of databases fails #44

Open
kunstner opened this issue Jan 16, 2025 · 0 comments
Open

Installation of databases fails #44

kunstner opened this issue Jan 16, 2025 · 0 comments

Comments

@kunstner
Copy link

Hi,
I would like to use euryale for metagenomic classifications. However, I can't install the databases using the provided command:

nextflow run dalmolingroup/euryale -r 1.0 \
  -profile singularity \
  -entry download \
  --download_functional \
  --download_kaiju \
  --download_host \
  --outdir references

I get always the following error message:


ERROR ~ ERROR: Validation of pipeline parameters failed!

 -- Check '.nextflow.log' file for details
ERROR ~ * Missing required parameter: --input

 -- Check '.nextflow.log' file for details
ERROR ~ * Missing required parameter: --kaiju_db

 -- Check '.nextflow.log' file for details
ERROR ~ * Missing required parameter: --id_mapping

 -- Check '.nextflow.log' file for details

I run euryale using Nextflow version 24.10.3.

Any help would be appreciated.

Best,
Axel

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant