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Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :
Search whether this issue (or a similar issue) has been solved before
using the search tab above. Link the previous issue if appropriate below.
Paste your deepTools version (deeptools --version) and your python
version (python --version) below.
deeptools 3.5.5
Python 3.10.12
Paste the full deepTools command that produces the issue below
(ignore if you simply spotted the issue in the code/documentation).
/cluster/facility/hlhuang/miniconda3/envs/pip/bin/computeMatrix reference-point --referencePoint center -p ${THREADS} -b 3000 -a 3000 -R "/cluster/facility/hlhuang/zifeng001/1file/ATACregion/tss.bed" -S bigwig/*.bw --skipZeros -o tss/TSS.gz
/cluster/facility/hlhuang/miniconda3/envs/pip/bin/plotHeatmap -m tss/TSS.gz -out tss/TSS_Heatmap.pdf --plotFileFormat pdf --dpi 720
Paste the output printed on screen from the command that produces the issue
below (ignore if you simply spotted the issue in the code/documentation).
Question:
I get the result. but i want anno the heatmap using some gene. As you can see, my input is differential peaks or Tss.bed, and i annotate the peaks to gene, Or I want to know which gene's TSS is different in different samples. I know featureAlignedHeatmap function in ChIPpeakAnno package in R. But I don't think it's clear enough, especially when it's presented as anno_block.
I want annotate the region in heatmap like this
Any help would be appreciated
The text was updated successfully, but these errors were encountered:
Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :
Search whether this issue (or a similar issue) has been solved before
using the search tab above. Link the previous issue if appropriate below.
Paste your deepTools version (
deeptools --version
) and your pythonversion (
python --version
) below.deeptools 3.5.5
Python 3.10.12
Paste the full deepTools command that produces the issue below
(ignore if you simply spotted the issue in the code/documentation).
below (ignore if you simply spotted the issue in the code/documentation).
Question:
I get the result. but i want anno the heatmap using some gene. As you can see, my input is differential peaks or Tss.bed, and i annotate the peaks to gene, Or I want to know which gene's TSS is different in different samples. I know featureAlignedHeatmap function in ChIPpeakAnno package in R. But I don't think it's clear enough, especially when it's presented as anno_block.
I want annotate the region in heatmap like this
![image](https://private-user-images.githubusercontent.com/109973822/345888654-417d79fe-9133-44b0-8fbf-5892f8893d70.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MzkzOTI2NjMsIm5iZiI6MTczOTM5MjM2MywicGF0aCI6Ii8xMDk5NzM4MjIvMzQ1ODg4NjU0LTQxN2Q3OWZlLTkxMzMtNDRiMC04ZmJmLTU4OTJmODg5M2Q3MC5wbmc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjUwMjEyJTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI1MDIxMlQyMDMyNDNaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT1hYjdmMTNiZjBmMzE1MGZmZTFhN2IwYmExNzBiOTEzMWRkNDk4Y2YwNWI2NzMzODljODI0NjFkMDA5YTlhOWIyJlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCJ9.PhWYxzGNo81jcAanyuzKOONjuqiU8Ru_X5OATg9KaU0)
Any help would be appreciated
The text was updated successfully, but these errors were encountered: