[Question] Assignement of transcripts located on polygons overlap after patch segmentation

[ConstensouxAlexis]

Hello !
I have a question regarding patches aggregation, after Baysor has been run on several patches. Overlap between patches produces overlapping polygons, that are merged (or not) depending on their intersection area. After this step, there are still polygons with little overlap. When building the transcripts table, if a transcript is located on the overlap of several polygons, is there any rule/strategy to decide to which polygon this transcript is assigned ? I couldn't find in your code where this issue could be adressed, so I am curious to know how this is done !
Thank you !

[quentinblampey]

Hello @ConstensouxAlexis, for now, transcripts that are found on overlapping cells are counted for every cell that it touches.
This will be changed after the release of shapely==2.1.0, because it will add a new feature to ease removing the overlaps between cells!