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basic-geography.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/geo/basic-geography.owl/"
xml:base="http://purl.obolibrary.org/obo/geo/basic-geography.owl/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:cito="http://purl.org/spar/cito/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:oboInOwl1="ttp://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/geo/basic-geography.owl">
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/geo.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"/>
<dc:creator xml:lang="en">William R. Hogan</dc:creator>
<rdfs:comment xml:lang="en">This OWL file is an inventory of instances that are geographical (material) entities (not organizations).</rdfs:comment>
<owl:versionInfo xml:lang="en">2016-03-26</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://xmlns.com/foaf/0.1/page -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000137 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000137"/>
<!-- http://purl.obolibrary.org/obo/RO_0002150 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002150">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002323"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>X continuous_with Y if and only if X and Y share a fiat boundary.</obo:IAO_0000115>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000118>connected to</obo:IAO_0000118>
<obo:IAO_0000232>The label for this relation was previously connected to. I relabeled this to "continuous with". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)</obo:IAO_0000232>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">continuous with</rdfs:label>
<rdfs:seeAlso>FMA:85972</rdfs:seeAlso>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002163 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002163">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002323"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>A is spatially_disjoint_from B if and only if they have no parts in common</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. </obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22293552"/>
<obo:IAO_0000232>Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy</obo:IAO_0000232>
<obo:IAO_0000424>BFO_0000051 exactly 0 (BFO_0000050 some ?Y)</obo:IAO_0000424>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:label>spatially disjoint from</rdfs:label>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern</foaf:page>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002219 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002219">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002220"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002221"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">surrounded by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002220 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002220">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002163"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#SymmetricProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:IAO_0000112>A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.</obo:IAO_0000112>
<obo:IAO_0000112>The epidermis layer of a vertebrate is adjacent to the dermis.</obo:IAO_0000112>
<obo:IAO_0000112>The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies.</obo:IAO_0000112>
<obo:IAO_0000112>The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>x adjacent to y if and only if x and y share a boundary.</obo:IAO_0000115>
<obo:IAO_0000116>This relation acts as a join point with BSPO</obo:IAO_0000116>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">adjacent to</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_0002220"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000112"/>
<owl:annotatedTarget>A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts.</owl:annotatedTarget>
<rdfs:seeAlso rdf:resource="https://github.com/jhpoelen/eol-globi-data/issues/225#issuecomment-218584934"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/RO_0002221 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002221">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002220"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>inverse of surrounded by</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/RO_0002259"/>
<rdfs:label xml:lang="en">surrounds</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002323 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002323">
<obo:IAO_0000115>A mereological relationship or a topological relationship</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships</obo:IAO_0000232>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">mereotopologically related to</rdfs:label>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/GEO_000000372 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GEO_000000372">
<obo:IAO_0000118 xml:lang="en">geographical location</obo:IAO_0000118>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/GEO_000000373 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/GEO_000000373">
<obo:IAO_0100001>http://purl.obolibrary.org/obo/ENVO_00000063</obo:IAO_0100001>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/GEO_000000374 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GEO_000000374"/>
<!-- http://purl.obolibrary.org/obo/GEO_000083897 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GEO_000083897">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GEO_000000373"/>
<obo:IAO_0100001>http://purl.obolibrary.org/obo/ENVO_00000015</obo:IAO_0100001>
<rdfs:label xml:lang="en">obsolete ocean</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GEO_000083898 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GEO_000083898">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GEO_000000373"/>
<obo:IAO_0100001>http://purl.obolibrary.org/obo/ENVO_00000016</obo:IAO_0100001>
<rdfs:label xml:lang="en">obsolete sea</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/GEO_000083899 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GEO_000083899">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GEO_000000373"/>
<obo:IAO_0100001>http://purl.obolibrary.org/obo/ENVO_00000020</obo:IAO_0100001>
<rdfs:label xml:lang="en">obsolete lake</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/GEO_000000338 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000338">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000374"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000339"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000055480"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083894"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083896"/>
<obo:IAO_0000118 xml:lang="en">North America</obo:IAO_0000118>
<oboInOwl:hasDbXref>MeSH: D009656</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">continent of North America</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000000339 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000339">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000374"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000338"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000055480"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083894"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083896"/>
<obo:IAO_0000118 xml:lang="en">South America</obo:IAO_0000118>
<oboInOwl:hasDbXref>MeSH: D013020</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">continent of South America</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000000340 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000340">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000374"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083894"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083895"/>
<obo:IAO_0000118 xml:lang="en">Africa</obo:IAO_0000118>
<oboInOwl:hasDbXref>MeSH: D000349</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">continent of Africa</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000000341 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000341">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000374"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000342"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083895"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083896"/>
<obo:IAO_0000118 xml:lang="en">Asia</obo:IAO_0000118>
<oboInOwl:hasDbXref>MeSH: D001208</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">continent of Asia</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000000342 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000342">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000374"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000341"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000055471"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083894"/>
<obo:IAO_0000118 xml:lang="en">Europe</obo:IAO_0000118>
<oboInOwl:hasDbXref>MeSH: D005060</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">continent of Europe</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000000343 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000343">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000374"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083895"/>
<obo:RO_0002220 rdf:resource="http://purl.obolibrary.org/obo/GEO_000083896"/>
<obo:IAO_0000118 xml:lang="en">Australia</obo:IAO_0000118>
<oboInOwl:hasDbXref>MeSH: D001315</oboInOwl:hasDbXref>
<rdfs:label xml:lang="en">continent of Australia</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000000344 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000344">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000374"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<obo:IAO_0000118 xml:lang="en">Antarctica</obo:IAO_0000118>
<rdfs:label xml:lang="en">continent of Antarctica</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000000345 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000000345">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/GEO_000000372"/>
<obo:IAO_0000111 xml:lang="en">region of entire Earth</obo:IAO_0000111>
<oboInOwl:hasDbXref>MeSH: D018534</oboInOwl:hasDbXref>
<rdfs:comment xml:lang="en">does not include the entire Earth, just the entire "surface of the earth" (scare quotes, not term indicators). Some geology/geography ontology will need to define it well at some point, but as of now, I cannot find any good definitions.</rdfs:comment>
<rdfs:label xml:lang="en">Earth</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/GEO_000055471 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000055471"/>
<!-- http://purl.obolibrary.org/obo/GEO_000055480 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000055480"/>
<!-- http://purl.obolibrary.org/obo/GEO_000083894 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000083894"/>
<!-- http://purl.obolibrary.org/obo/GEO_000083895 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000083895"/>
<!-- http://purl.obolibrary.org/obo/GEO_000083896 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000083896"/>
<!-- http://purl.obolibrary.org/obo/GEO_000083900 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/GEO_000083900">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/BFO_0000142"/>
<obo:BFO_0000137 rdf:resource="http://purl.obolibrary.org/obo/GEO_000000345"/>
<rdfs:label xml:lang="en">Equator</rdfs:label>
</owl:NamedIndividual>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.29.2024-05-13T12:11:03Z) https://github.com/owlcs/owlapi -->