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gatk4 #75

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ewels opened this issue Dec 11, 2024 · 1 comment
Open

gatk4 #75

ewels opened this issue Dec 11, 2024 · 1 comment

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@ewels
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ewels commented Dec 11, 2024

See slack thread: https://nfcore.slack.com/archives/C08322N6UMP/p1732726284928399

@ewels ewels converted this from a draft issue Dec 11, 2024
@delagoya
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delagoya commented Feb 5, 2025

Repo https://github.com/broadinstitute/gatk
Intel GKL repo https://github.com/IntelLabs/GKL

Likely we should split this to subtasks for:

  1. HaplotypeCaller
  2. gcnvkernel
  3. Mutect2

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