Repositories list

• yoda

  Public
  A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  ansibledataresearch+ 4yodairodsautomated-deploymentutrecht-university

  HTML

  •

  GNU General Public License v3.0

  •26•46•48•4•Updated Feb 7, 2025Feb 7, 2025

• msl_api

  Public
  PHP

  •1•0•0•8•Updated Feb 7, 2025Feb 7, 2025

• ricgraph

  Public
  Ricgraph - Research in context graph

  visualizationmetadataenrichment+ 14graphlinked-dataharvestknowledge-graphharvest-datagraph-databaseharvester+ 7

  Python

  •

  MIT License

  •4•27•0•0•Updated Feb 7, 2025Feb 7, 2025

• Paleobiology-Evolution

  Public
  Part of the BSc in Geosciences programme at UU: course materials

  Other

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• galaxy-tools-ibridges

  Public
  iBridges-based tools for Galaxy to interact with iRODS/YODA

  Python

  •

  MIT License

  •0•0•1•0•Updated Feb 6, 2025Feb 6, 2025

• yoda-ruleset

  Public
  iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyodairods

  Python

  •

  GNU General Public License v3.0

  •13•9•0•1•Updated Feb 6, 2025Feb 6, 2025

• containerplatform-docs

  Public
  Container Platform public documentation

  Dockerfile

  •2•1•0•0•Updated Feb 6, 2025Feb 6, 2025

• epos-msl

  Public
  EPOS Multi-scale laboratories CKAN deployment

  redisansiblesolr+ 4postgresqlckanapache2epos

  Shell

  •

  GNU General Public License v3.0

  •2•7•0•0•Updated Feb 6, 2025Feb 6, 2025

• hpc-spring-school

  Public
  Quarto website for HPC Spring School @ UU 2025

  github-pageswebsiteworkshop+ 2hpcquarto

  HTML

  •

  MIT License

  •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• workshop-computational-reproducibility

  Public
  Material for the workshop 'Best Practices for Writing Reproducible Code'

  SCSS

  •

  Other

  •13•10•19•0•Updated Feb 6, 2025Feb 6, 2025

• yoda-portal

  Public
  Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonflaskyoda+ 1irods

  JavaScript

  •

  GNU General Public License v3.0

  •13•10•0•2•Updated Feb 6, 2025Feb 6, 2025

• momentum-dataflow

  Public
  Repository for publishing website about data management practices of the Momentum project

  datadatamanagementdatageneration

  HTML

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• getting-started

  Public
  Getting started with GitHub @UtrechtUniversity

  githubdocumentationgetting-started+ 1utrecht-university

  Creative Commons Zero v1.0 Universal

  •4•14•12•0•Updated Feb 5, 2025Feb 5, 2025

• autumn-fair

  Public
  Follow up on Summer-Fair.

  Jupyter Notebook

  •

  MIT License

  •0•1•2•0•Updated Feb 4, 2025Feb 4, 2025

• wildlifenl

  Public
  Back-end API for the WildlifeNL project.

  Go

  •

  Mozilla Public License 2.0

  •0•0•14•0•Updated Feb 4, 2025Feb 4, 2025

• wildlifenl-research

  Public
  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•8•3•Updated Feb 3, 2025Feb 3, 2025

• ibridges-ansible

  Public
  Ansible modules for syncing data with iRODS using iBridges.

  Python

  •

  MIT License

  •0•1•4•1•Updated Feb 3, 2025Feb 3, 2025

• sol

  Public
  HTML

  •1•0•2•1•Updated Feb 3, 2025Feb 3, 2025

• PBfR_stats

  Public
  Code for creating a Quarto report of the Privacy Basics for Researchers module stats

  HTML

  •

  MIT License

  •0•0•1•0•Updated Feb 3, 2025Feb 3, 2025

• wildlifenl-ingest

  Public
  Manual data ingest tool for the WildlifeNL project

  Mozilla Public License 2.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• wildlifenl-admin

  Public
  Administration tool for the WildlifeNL project

  Mozilla Public License 2.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• wildlifenl-client

  Public
  Client lib for interacting with the WildlifeNL API

  Go

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• yoda-zabbix

  Public
  Zabbix files for Yoda: https://github.com/UtrechtUniversity/yoda

  zabbixyodazabbix-agentd

  Shell

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• yoda-web-mock

  Public
  Mocks for web services that Yoda depends on.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• yoda-external-user-service

  Public
  A service that provides for external user enrollment and external user management via a HTTP API for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyoda

  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jan 27, 2025Jan 27, 2025

• yoda-moai

  Public
  Yoda OAI-PMH endpoint: https://github.com/UtrechtUniversity/yoda

  oai-pmh

  Python

  •

  Other

  •21•1•0•0•Updated Jan 27, 2025Jan 27, 2025

• caddy-reverse-proxy

  Public
  A simple Dockerfile providing a Caddy reverse proxy that can be configured using environment variables.

  Dockerfile

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• src-component-galaxy

  Public
  Galaxy Workflow manager for SURF Research Cloud

  Jinja

  •

  GNU Lesser General Public License v2.1

  •3•0•4•0•Updated Jan 27, 2025Jan 27, 2025

• DOA-journal-occupational

  Public
  This is a project proposal for a diamond open access (DOA) journal in occupational health, with a focus on the publication of research and educational content, as well as experiences from young researchers in the field.

  JavaScript

  •

  MIT License

  •0•1•0•0•Updated Jan 24, 2025Jan 24, 2025

• RAS-verification

  Public
  Runtime verification for robot-assisted surgery

  MIT License

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025