From 2c27f45bacca5162ccbb08a9d690ee68fd9aac88 Mon Sep 17 00:00:00 2001
From: Harshad Hegde <hegdehb@gmail.com>
Date: Wed, 14 Feb 2024 23:12:45 -0600
Subject: [PATCH 1/2] Add ontobot workflow

---
 .github/workflows/onotobot.yml | 94 ++++++++++++++++++++++++++++++++++
 1 file changed, 94 insertions(+)
 create mode 100644 .github/workflows/onotobot.yml

diff --git a/.github/workflows/onotobot.yml b/.github/workflows/onotobot.yml
new file mode 100644
index 0000000..451e6d5
--- /dev/null
+++ b/.github/workflows/onotobot.yml
@@ -0,0 +1,94 @@
+name: Create new pull request
+
+on:
+  workflow_dispatch:
+  issues:
+    types: [ opened, edited ]
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    outputs:
+      phraseExists: ${{ steps.check-body.outputs.result }}
+    steps:
+      - name: Check if issue body contains 'Hey ontobot'
+        id: check-body
+        uses: actions/github-script@v6
+        with:
+          script: |
+            const issue = await github.rest.issues.get({
+              owner: context.repo.owner,
+              repo: context.repo.repo,
+              issue_number: context.issue.number
+            });
+            if (!issue.data.body) {
+              console.log('Issue body is empty or null');
+              return false;
+            }
+            return issue.data.body.toLowerCase().includes('hey ontobot');
+
+  build:
+    needs: check
+    if: needs.check.outputs.phraseExists == 'true'
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        python-version: ["3.9"]
+        os: [ ubuntu-latest ]
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Return issue number
+        id: gh-script-issue
+        uses: actions/github-script@v6
+        with:
+          # github-token: ${{ secrets.GH_TOKEN }}
+          script: |
+            const issue_number = context.issue.number
+            const repo = context.repo.owner+"/"+context.repo.repo
+            return issue_number
+      
+      - name: Return repository name
+        id: gh-script-repo
+        uses: actions/github-script@v6
+        with:
+          # github-token: ${{ secrets.GH_TOKEN }}
+          script: |
+            const repo = context.repo.owner+"/"+context.repo.repo
+            return repo
+
+      - name: Set branch name
+        id: vars
+        run: |
+          echo "resource=src/ontology/pato-edit.obo" >> $GITHUB_ENV
+          echo "branch-name=ochange_automation_"${{ steps.gh-script-issue.outputs.result }} >> $GITHUB_ENV
+
+      - name: Install dependencies
+        run: |
+          pip install ontobot-change-agent
+
+      - name: Run ochange
+        id: ochange
+        run: |
+          ochange process-issue ${{ env.resource }} \
+          -r ${{ steps.gh-script-repo.outputs.result }} \
+          -n ${{ steps.gh-script-issue.outputs.result }} \
+          -g ${{ secrets.GH_TOKEN }}
+          -p PATO
+
+      - name: Create Pull Request
+        uses: peter-evans/create-pull-request@v4
+        if: ${{ env.PR_TITLE}}
+        with:
+          branch-suffix: short-commit-hash
+          labels: Automated
+          body: ${{ env.PR_BODY }}
+          title: ${{ env.PR_TITLE }}
+          base: ${{ github.head_ref }}
+          branch: ${{ env.branch-name }}
+       #   token: ${{ secrets.GH_TOKEN }}
\ No newline at end of file

From 0b364c7ee7f0f65b291fce10509177fd6f72b525 Mon Sep 17 00:00:00 2001
From: Harshad Hegde <hegdehb@gmail.com>
Date: Wed, 14 Feb 2024 23:20:50 -0600
Subject: [PATCH 2/2] typo

---
 .github/workflows/onotobot.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/onotobot.yml b/.github/workflows/onotobot.yml
index 451e6d5..ecac121 100644
--- a/.github/workflows/onotobot.yml
+++ b/.github/workflows/onotobot.yml
@@ -78,7 +78,7 @@ jobs:
           ochange process-issue ${{ env.resource }} \
           -r ${{ steps.gh-script-repo.outputs.result }} \
           -n ${{ steps.gh-script-issue.outputs.result }} \
-          -g ${{ secrets.GH_TOKEN }}
+          -g ${{ secrets.GH_TOKEN }} \
           -p PATO
 
       - name: Create Pull Request