diff --git a/harpy/snakefiles/demultiplex_gen1.smk b/harpy/snakefiles/demultiplex_gen1.smk index 67f1e687..0d38da91 100644 --- a/harpy/snakefiles/demultiplex_gen1.smk +++ b/harpy/snakefiles/demultiplex_gen1.smk @@ -98,7 +98,7 @@ rule demultiplex_samples: None shell: """ - ( zgrep -A3 "A..{params}B..D" {input} | grep -v "^--$" | gzip -q > {output} ) || touch {output} + ( zgrep -A3 "BX:Z:A..{params}B..D" {input} | grep -v "^--$" | gzip -q > {output} ) || touch {output} """ rule assess_quality: