cleanup.bash

rm -f thermus5*
rm -f A_IQTREE_ChooseModelThermus6/iqout*

rm -f B_IQTREE_MLAnalysisThermus6/gtr*
rm -f B_IQTREE_MLAnalysisThermus6/jc*
rm -f B_IQTREE_MLAnalysisThermus6/tim2*

rm -f C_IQTREE_ChooseModelThermus5/iqout*

rm -f D_IQTREE_MLAnalysisThermus5/gtr*
rm -f D_IQTREE_MLAnalysisThermus5/jc*
rm -f D_IQTREE_MLAnalysisThermus5/tim2*

rm -f E_compoTree/thermusCompoCons.nex

rm -f F_TestCompHomogeneity/iqout*

rm -f G_MLTwoCompNDCH/finished_sims*
rm -f G_MLTwoCompNDCH/likes
rm -f G_MLTwoCompNDCH/*conselOut
rm -f G_MLTwoCompNDCH/*p4_tPickle
rm -f G_MLTwoCompNDCH/tamcft*

rm -f H_BayesianGTRandTwoCompNDCH/mcmc*

rm -f I_ndchWithFreeCompLocation/mcmc*

rm -f J_ndchFreeLocationMCMCMC/mcmc*

rm -f K_multiCompNDCH/mcmc*

rm -f L_NDCH2/mcmc*

rm -f M_NDCH2_MCMCMC/mcmc*

rm -f N_RootingWithComposition/mcmc*

rm -f O_rootingWithSimData/mcmc*
rm -f O_rootingWithSimData/d.nex