input.json

{"data":[["/home/vagrant/input1","sub1","sess1"],["/home/vagrant/input2","sub2","sess2"]], "options":{    
"reorient_params_x_mm":0, 
"reorient_params_y_mm":0, 
"reorient_params_z_mm":0,
"reorient_params_pitch":0, 
"reorient_params_roll":0, 
"reorient_params_yaw":0,    
"realign_fwhm":8,
    "realign_interp":2,
    "realign_quality":1,
    "realign_register_to_mean":true,
    "realign_separation":4,
    "realign_wrap": [0,0,0],
    "realign_write_interp": 4,
    "realign_write_mask": true,
    "realign_write_which": [2, 1],
    "realign_write_wrap": [0,0,0],
    "slicetime_ref_slice":16,
"normalize_affine_regularization_type":"mni",    
    "normalize_write_bounding_box": [[-78, -112, -70],[78, 76, 85]],
    "normalize_write_interp": 1,
    "normalize_write_voxel_sizes": [3,3,3],
"smoothing_x_mm":10.0,"smoothing_y_mm":10.0,"smoothing_z_mm":10.0,"smoothing_implicit_masking":false
}}