data-library-structured-template.yaml

---
destination:
    description: Short description of data library
    name: Name of Data Library
    synopsis: Longer description of data library
    type: library
items:
    # Each item in the items array with a 'name' tag is a subfolder. Anything with a 'src' tag in the array is a file.
    # If there is a subfolder, it requires 'description' and 'items' tag as well as the name.
    - name: Sub-folder name
      description: "Description of sub folder and contents"
      items:
        - name: Sub-sub-folder name
          description: "Description of sub-sub folder and contents"
          items:
            # The following are examples of files. Note the 'src' tag. The files will be called the entire url.
            # This is for provenance issues. These files will be created in the sub-sub-folder. ext is the galaxy
            # file type for each file.
            - ext: fastqsanger
              info: https://doi.org/10.5281/zenodo.582600
              src: url
              url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/mutant_R1.fastq
            - ext: fastqsanger
              info: https://doi.org/10.5281/zenodo.582600
              src: url
              url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/mutant_R2.fastq
            - ext: fasta
              info: https://doi.org/10.5281/zenodo.582600
              src: url
              url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/wildtype.fna
            - ext: genbank
              info: https://doi.org/10.5281/zenodo.582600
              src: url
              url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/wildtype.gbk
            - ext: gff3
              info: https://doi.org/10.5281/zenodo.582600
              src: url
              url: https://zenodo.org/api/files/287966da-5411-4f79-8cfb-0ffa84d0d6cc/wildtype.gff
        # This file is created in the sub-folder
        - url: https://zenodo.org/record/1257429/files/Ecoli_C_assembly.fna
          src: url
          ext: fasta
          info: https://zenodo.org/record/1257429
    - name: Another sub folder
      description: "description of another sub-folder"
      items:
        - url: https://zenodo.org/record/582600/files/wildtype.fna
          src: url
          ext: fasta
          info: https://zenodo.org/record/582600