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tools.yaml
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---
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: mimodd_main
owner: wolma
tool_panel_section_label: MiModD
- name: dwt_var_perfeature
owner: devteam
tool_panel_section_label: Statistics
- name: suite_qiime
owner: iuc
tool_panel_section_label: Qiime
- name: suite_mothur
owner: iuc
tool_panel_section_label: Mothur
- name: bedtools
owner: iuc
tool_panel_section_label: "Operate on Genomic Intervals"
- name: mlocarna
owner: rnateam
tool_panel_section_label: "RNA Analysis"
- name: rcas
owner: rnateam
tool_panel_section_label: "RNA Analysis"
- name: paralyzer
owner: rnateam
tool_panel_section_label: "RNA Analysis"
- name: ebi_search_rest_results
owner: iuc
tool_panel_section_label: "Get Data"
- name: ebi_metagenomics_run_downloader
owner: iuc
tool_panel_section_label: "Get Data"
- name: transformation
owner: ethevenot
tool_panel_section_label: Statistics
- name: anova
owner: lecorguille
tool_panel_section_label: Statistics
- name: heatmap
owner: ethevenot
tool_panel_section_label: Statistics
- name: univariate
owner: ethevenot
tool_panel_section_label: Statistics
- name: multivariate
owner: ethevenot
tool_panel_section_label: Statistics
- name: biosigner
owner: ethevenot
tool_panel_section_label: Statistics
- name: probmetab
owner: mmonsoor
tool_panel_section_label: Annotation
- name: lcmsmatching
owner: prog
tool_panel_section_label: Annotation
- name: add_input_name_as_column
owner: mvdbeek
tool_panel_section_label: Text Manipulation
- name: taxonomy_krona_chart
owner: crs4
tool_panel_section_label: NCBI Blast
- name: text_processing
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
tool_panel_section_label: Text Manipulation
- name: uniprotxml_downloader
owner: galaxyp
tool_panel_section_label: Get Data
- name: sra_tools
owner: iuc
tool_panel_section_label: Get Data
- name: ega_download_streamer
owner: yhoogstrate
tool_panel_section_label: Get Data
- name: dorina
owner: rnateam
tool_panel_section_label: Get Data
- name: dbbuilder
owner: galaxyp
tool_panel_section_label: Get Data
- name: unipept
owner: galaxyp
tool_panel_section_label: Get Data
- name: prinseq
owner: iuc
tool_panel_section_label: Text Manipulation
- name: add_value
owner: devteam
tool_panel_section_label: Text Manipulation
- name: split_file_on_column
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: merge_cols
owner: devteam
tool_panel_section_label: Text Manipulation
- name: text_processing
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
tool_panel_section_label: Text Manipulation
- name: coverage
owner: devteam
tool_panel_section_label: Text Manipulation
- name: regex_replace
owner: kellrott
tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
owner: devteam
tool_panel_section_label: Text Manipulation
- name: merge
owner: devteam
tool_panel_section_label: Text Manipulation
- name: intersect
owner: devteam
tool_panel_section_label: Text Manipulation
- name: flanking_features
owner: devteam
tool_panel_section_label: Text Manipulation
- name: join
owner: devteam
tool_panel_section_label: Text Manipulation
- name: cluster
owner: devteam
tool_panel_section_label: Text Manipulation
- name: get_flanks
owner: devteam
tool_panel_section_label: Text Manipulation
- name: complement
owner: devteam
tool_panel_section_label: Text Manipulation
- name: subtract
owner: devteam
tool_panel_section_label: Text Manipulation
- name: basecoverage
owner: devteam
tool_panel_section_label: Text Manipulation
- name: subtract_query
owner: devteam
tool_panel_section_label: Text Manipulation
- name: sed_wrapper
owner: bjoern-gruening
tool_panel_section_label: Text Manipulation
- name: unique
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: dna_filtering
owner: devteam
tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
owner: bgruening
tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
owner: peterjc
tool_panel_section_label: Filter and Sort
- name: find_in_reference
owner: jjohnson
tool_panel_section_label: Filter and Sort
- name: sample_seqs
owner: peterjc
tool_panel_section_label: Filter and Sort
- name: collection_column_join
owner: iuc
tool_panel_section_label: Join, Subtract and Group
# - install_repository_dependencies: true
# install_resolver_dependencies: true
# install_tool_dependencies: false
# name: datamash_wrapper
# owner: agordon
# tool_panel_section_label: Join, Subtract and Group
- name: suite_datamash
owner: iuc
tool_panel_section_label: Join, Subtract and Group
- name: subtract
owner: devteam
tool_panel_section_label: Join, Subtract and Group
- name: bam_to_scidx
owner: iuc
tool_panel_section_label: Convert Formats
- name: map_peptides_to_bed
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: idconvert
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: msconvert_nix
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: resize_coordinate_window
owner: iuc
tool_panel_section_label: Convert Formats
- name: uniprot_rest_interface
owner: bgruening
tool_panel_section_label: Convert Formats
- name: bigwig_to_bedgraph
owner: bgruening
tool_panel_section_label: Convert Formats
- name: gffread
owner: devteam
tool_panel_section_label: Convert Formats
- name: msconvert
owner: galaxyp
tool_panel_section_label: Convert Formats
- name: tabular_to_fasta
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fasta_to_tabular
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fastqtofasta
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: fastq_to_fasta
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: length_and_gc_content
owner: iuc
tool_panel_section_label: Extract Features
- name: extract_genomic_dna
owner: iuc
tool_panel_section_label: "Other Tools"
- name: concat
owner: devteam
tool_panel_section_label: Operate on Genomic Intervals
- name: complement
owner: devteam
tool_panel_section_label: Operate on Genomic Intervals
- name: cluster
owner: devteam
tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
owner: devteam
tool_panel_section_label: Operate on Genomic Intervals
- name: annotation_profiler
owner: devteam
tool_panel_section_label: Operate on Genomic Intervals
- name: numeric_clustering
owner: bgruening
tool_panel_section_label: Statistics
- name: t_test_two_samples
owner: devteam
tool_panel_section_label: Statistics
- name: seq_composition
owner: peterjc
tool_panel_section_label: Statistics
- name: plot_from_lda
owner: devteam
tool_panel_section_label: Statistics
- name: mine
owner: devteam
tool_panel_section_label: Statistics
- name: lda_analysis
owner: devteam
tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
owner: devteam
tool_panel_section_label: Statistics
- name: count_gff_features
owner: devteam
tool_panel_section_label: Statistics
- name: correlation
owner: devteam
tool_panel_section_label: Statistics
- name: fasta_nucleotide_color_plot
owner: iuc
tool_panel_section_label: Graph/Display Data
- name: jbrowse
owner: iuc
tool_panel_section_label: Graph/Display Data
- name: venn_list
owner: peterjc
tool_panel_section_label: Graph/Display Data
- name: mummer
owner: peterjc
tool_panel_section_label: Graph/Display Data
- name: karyotype_plot
owner: guru-ananda
tool_panel_section_label: Graph/Display Data
- name: ucsc_custom_track
owner: devteam
tool_panel_section_label: Graph/Display Data
- name: scatterplot
owner: devteam
tool_panel_section_label: Graph/Display Data
- name: histogram
owner: devteam
tool_panel_section_label: Graph/Display Data
- name: gmaj
owner: devteam
tool_panel_section_label: Graph/Display Data
- name: xy_plot
owner: devteam
tool_panel_section_label: Graph/Display Data
- name: featurecounter
owner: devteam
tool_panel_section_label: Regional Variation
- name: indels_3way
owner: devteam
tool_panel_section_label: Regional Variation
- name: draw_stacked_barplots
owner: devteam
tool_panel_section_label: Regional Variation
- name: delete_overlapping_indels
owner: devteam
tool_panel_section_label: Regional Variation
- name: compute_motifs_frequency
owner: devteam
tool_panel_section_label: Regional Variation
- name: compute_motif_frequencies_for_all_motifs
owner: devteam
tool_panel_section_label: Regional Variation
- name: categorize_elements_satisfying_criteria
owner: devteam
tool_panel_section_label: Regional Variation
- name: best_regression_subsets
owner: devteam
tool_panel_section_label: Statistics
- name: principal_component_analysis
owner: devteam
tool_panel_section_label: Statistics
- name: kernel_principal_component_analysis
owner: devteam
tool_panel_section_label: Statistics
- name: kernel_canonical_correlation_analysis
owner: devteam
tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
owner: devteam
tool_panel_section_label: Statistics
- name: mutate_snp_codon
owner: devteam
tool_panel_section_label: Evolution
- name: meme_meme
owner: iuc
tool_panel_section_label: Motif Tools
- name: meme_fimo
owner: iuc
tool_panel_section_label: Motif Tools
- name: weblogo3
owner: devteam
tool_panel_section_label: Motif Tools
- name: muscle
owner: crs4
tool_panel_section_label: Multiple Alignments
- name: mafft
owner: rnateam
tool_panel_section_label: Multiple Alignments
- name: hammock
owner: hammock
tool_panel_section_label: Multiple Alignments
- name: compalignp
owner: rnateam
tool_panel_section_label: Multiple Alignments
- name: mafft
owner: rnateam
tool_panel_section_label: Multiple Alignments
- name: cdhit
owner: jjohnson
tool_panel_section_label: Multiple Alignments
- name: clustalw
owner: devteam
tool_panel_section_label: Multiple Alignments
- name: vegan_diversity
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: vegan_fisher_alpha
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: vegan_rarefaction
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: vsearch
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_filter_abundance
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_filter_below_abundance_cutoff
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_extract_partitions
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_abundance_distribution
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_count_median
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_partition
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_normalize_by_median
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: khmer_abundance_distribution_single
owner: iuc
tool_panel_section_label: Metagenomic analyses
- name: t2t_report
owner: devteam
tool_panel_section_label: Metagenomic analyses
- name: t2ps
owner: devteam
tool_panel_section_label: Metagenomic analyses
- name: poisson2test
owner: devteam
tool_panel_section_label: Metagenomic analyses
- name: lca_wrapper
owner: devteam
tool_panel_section_label: Metagenomic analyses
- name: gi2taxonomy
owner: devteam
tool_panel_section_label: Metagenomic analyses
- name: find_diag_hits
owner: devteam
tool_panel_section_label: Metagenomic analyses
- name: fasta_merge_files_and_filter_unique_sequences
owner: galaxyp
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: lighter
owner: bgruening
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: sickle
owner: iuc
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fastq_paired_end_interlacer
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fastq_paired_end_joiner
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fasta_compute_length
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fastq_join
owner: lparsons
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: splitfasta
owner: rnateam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: je_clip
owner: gbcs-embl-heidelberg
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: je_demultiplex
owner: gbcs-embl-heidelberg
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: je_demultiplex_illu
owner: gbcs-embl-heidelberg
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: je_markdupes
owner: gbcs-embl-heidelberg
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: align_back_trans
owner: peterjc
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: seq_filter_by_mapping
owner: peterjc
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: pear
owner: iuc
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fastx_artifacts_filter
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: fastx_barcode_splitter
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: fastx_clipper
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: fastx_nucleotides_distribution
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: fasta_filter_by_length
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fasta_concatenate_by_species
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fastx_collapser
owner: devteam
tool_panel_section_label: 'Quality Control'
- name: fasta_nucleotide_changer
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: fasta_formatter
owner: devteam
tool_panel_section_label: "FASTA/FASTQ manipulation"
- name: trim_galore
owner: bgruening
tool_panel_section_label: 'Quality Control'
- name: fastqc
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: trimmomatic
owner: pjbriggs
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: cutadapt
owner: lparsons
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_paired_end_joiner
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: short_reads_trim_seq
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: short_reads_figure_score
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: tabular_to_fastq
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_trimmer_by_quality
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_trimmer
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_to_tabular
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_stats
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_paired_end_splitter
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_paired_end_interlacer
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_paired_end_deinterlacer
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_masker_by_quality
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_manipulation
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_groomer
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_filter
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_combiner
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastx_trimmer
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastx_reverse_complement
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastx_renamer
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastx_quality_statistics
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_quality_filter
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_quality_converter
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: fastq_quality_boxplot
owner: devteam
tool_panel_section_label: 'FASTA/FASTQ manipulation'
- name: multiqc
owner: iuc
tool_panel_section_label: 'Quality Control'
- name: mira_assembler
owner: peterjc
tool_panel_section_label: 'Assembly'
- name: spades
owner: lionelguy
tool_panel_section_label: 'Assembly'
- name: rnaspades
owner: iuc
tool_panel_section_label: 'Assembly'
- name: sopra
owner: crs4
tool_panel_section_label: 'Assembly'
- name: ssake
owner: crs4
tool_panel_section_label: 'Assembly'
- name: crispr_recognition_tool
owner: bgruening
tool_panel_section_label: 'Assembly'
- name: minced
owner: bgruening
tool_panel_section_label: 'Assembly'
- name: edena
owner: crs4
tool_panel_section_label: 'Assembly'
- name: tophat2
owner: devteam
tool_panel_section_label: 'Mapping'
- name: bowtie2
owner: devteam
tool_panel_section_label: 'Mapping'
- name: rgrnastar
owner: iuc
tool_panel_section_label: 'Mapping'
- name: hisat2
owner: iuc
tool_panel_section_label: 'Mapping'
- name: bowtie_wrappers
owner: devteam
tool_panel_section_label: 'Mapping'
- name: bowtie_color_wrappers
owner: devteam
tool_panel_section_label: 'Mapping'
- name: bwa_mem
owner: crs4
tool_panel_section_label: 'Mapping'
- name: bwa_wrappers
owner: devteam
tool_panel_section_label: 'Mapping'
- name: megablast_xml_parser
owner: devteam
tool_panel_section_label: 'Mapping'
- name: megablast_wrapper
owner: devteam
tool_panel_section_label: 'Mapping'
- name: lastz_paired_reads
owner: devteam
tool_panel_section_label: 'Mapping'
- name: lastz
owner: devteam
tool_panel_section_label: 'Mapping'
- name: sailfish
owner: bgruening
tool_panel_section_label: 'RNA Analysis'
- name: deseq2
owner: iuc
tool_panel_section_label: 'RNA Analysis'
- name: salmon
owner: bgruening
tool_panel_section_label: 'RNA Analysis'
- name: featurecounts
owner: iuc
tool_panel_section_label: 'RNA Analysis'
- name: circexplorer
owner: bgruening
tool_panel_section_label: 'RNA Analysis'
- name: transdecoder
owner: iuc
tool_panel_section_label: 'RNA Analysis'
- name: trinity
owner: iuc
tool_panel_section_label: 'RNA Analysis'
- name: vienna_rna
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: remurna
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: rnasnp
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: rnacommender
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: blockbuster
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: tophat_fusion_post
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: stringtie
owner: iuc
tool_panel_section_label: 'RNA Analysis'
- name: dexseq
owner: iuc
tool_panel_section_label: 'RNA Analysis'
- name: cuffdiff
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: htseq_count
owner: lparsons
tool_panel_section_label: 'RNA Analysis'
- name: kinwalker
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: antarna
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: rnabob
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: structurefold
owner: tyty
tool_panel_section_label: 'RNA Analysis'
- name: rnashapes
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: rnacode
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: rnaz
owner: bgruening
tool_panel_section_label: 'RNA Analysis'
- name: cummerbund_to_tabular
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: cummerbund
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: blockclust
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: segemehl
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: infernal
owner: bgruening
tool_panel_section_label: 'RNA Analysis'
- name: cuffmerge
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: cuffquant
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: cuffnorm
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: cuffcompare
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: cufflinks
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: mirdeep2
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: mirdeep2_quantifier
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: mirdeep2_mapper
owner: rnateam
tool_panel_section_label: 'RNA Analysis'
- name: rseqc
owner: nilesh
tool_panel_section_label: 'RNA Analysis'
- name: rsem
owner: jjohnson
tool_panel_section_label: 'RNA Analysis'
- name: filter_transcripts_via_tracking
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: express
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: cufflinks
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: cuffcompare
owner: devteam
tool_panel_section_label: 'RNA Analysis'
- name: macs2
owner: iuc
tool_panel_section_label: Peak Calling
- name: diffbind
owner: bgruening
tool_panel_section_label: Peak Calling
- name: piranha
owner: rnateam
tool_panel_section_label: Peak Calling
- name: macs
owner: devteam
tool_panel_section_label: Peak Calling
- name: sicer
owner: devteam
tool_panel_section_label: Peak Calling
- name: ccat
owner: devteam
tool_panel_section_label: Peak Calling
- name: pileometh
owner: bgruening
tool_panel_section_label: DNA methylation
- name: bwameth
owner: iuc
tool_panel_section_label: DNA methylation
- name: metilene
owner: rnateam
tool_panel_section_label: DNA methylation
- name: rnbeads
owner: pavlo-lutsik
tool_panel_section_label: DNA methylation
- name: vcf_filter
owner: devteam
tool_panel_section_label: DNA methylation
- name: varscan_version_2
owner: devteam
tool_panel_section_label: "Variant Calling"
- name: freebayes
owner: devteam
tool_panel_section_label: "Variant Calling"
- name: vcf2pgsnp
owner: devteam
tool_panel_section_label: Phenotype Association
- name: snpfreq
owner: devteam
tool_panel_section_label: Phenotype Association
- name: hgv_hilbertvis
owner: devteam
tool_panel_section_label: Phenotype Association
- name: hgv_fundo
owner: devteam
tool_panel_section_label: Phenotype Association
- name: divide_pg_snp
owner: devteam
tool_panel_section_label: Phenotype Association
- name: ctd_batch
owner: devteam
tool_panel_section_label: Phenotype Association
- name: goseq
owner: iuc
tool_panel_section_label: Annotation
- name: kobas
owner: iuc
tool_panel_section_label: Annotation
- name: prokka
owner: crs4
tool_panel_section_label: Annotation
- name: nucleosome_prediction
owner: bgruening
tool_panel_section_label: Annotation
- name: sortmerna
owner: rnateam
tool_panel_section_label: Annotation
- name: snpsift_genesets
owner: iuc
tool_panel_section_label: "Variant Calling"
- name: miranda
owner: tgac
tool_panel_section_label: Annotation
- name: hammock
owner: hammock
tool_panel_section_label: Annotation
- name: segmentation_fold
owner: yhoogstrate
tool_panel_section_label: Annotation
- name: dotknot
owner: bgruening
tool_panel_section_label: Annotation
- name: transtermhp
owner: iuc
tool_panel_section_label: Annotation
- name: blast2go
owner: peterjc
tool_panel_section_label: Annotation
- name: augustus
owner: bgruening
tool_panel_section_label: Annotation
- name: hmmer3
owner: iuc
tool_panel_section_label: Annotation
- name: find_subsequences
owner: bgruening
tool_panel_section_label: Annotation
- name: gotohscan
owner: rnateam
tool_panel_section_label: Annotation
- name: snpsift_dbnsfp
owner: iuc
tool_panel_section_label: "Variant Calling"
- name: snpsift
owner: iuc
tool_panel_section_label: "Variant Calling"
- name: snpsift_dbnsfp_generic
owner: iuc
tool_panel_section_label: "Variant Calling"
- name: snpeff
owner: iuc
tool_panel_section_label: "Variant Calling"
- name: tmhmm_and_signalp
owner: peterjc
tool_panel_section_label: Annotation
- name: trna_prediction
owner: bgruening
tool_panel_section_label: Annotation
- name: antismash
owner: bgruening
tool_panel_section_label: Annotation
- name: snpeff_to_peptides
owner: jjohnson
tool_panel_section_label: Annotation
- name: snpeff_cds_report
owner: jjohnson
tool_panel_section_label: Annotation
- name: interproscan5
owner: bgruening
tool_panel_section_label: Annotation
- name: glimmer3
owner: bgruening
tool_panel_section_label: Annotation
- name: dgidb_annotator
owner: devteam
tool_panel_section_label: Annotation
- name: tmhmm_and_signalp
owner: peterjc
tool_panel_section_label: Annotation
- name: dgidb_annotator
owner: devteam
tool_panel_section_label: Annotation
- name: peptideshaker
owner: galaxyp
tool_panel_section_label: Proteomics
- name: hardklor
owner: galaxyp
tool_panel_section_label: Proteomics
- name: morpheus
owner: galaxyp
tool_panel_section_label: Proteomics
- name: protease_prediction
owner: bgruening
tool_panel_section_label: Proteomics
- name: decoyfasta
owner: galaxyp
tool_panel_section_label: Proteomics
- name: autodock_vina_prepare_ligand
owner: bgruening
tool_panel_section_label: ChemicalToolBox
- name: autodock_vina
owner: bgruening
tool_panel_section_label: ChemicalToolBox
- name: autodock_vina_prepare_receptor
owner: bgruening
tool_panel_section_label: ChemicalToolBox
- name: openmg
owner: bgruening
tool_panel_section_label: ChemicalToolBox
- name: ctb_machine_learning
owner: bgruening
tool_panel_section_label: ChemicalToolBox
- name: chemical_data_sources
owner: bgruening
tool_panel_section_label: ChemicalToolBox
- name: silicos_it
owner: bgruening
tool_panel_section_label: ChemicalToolBox
- name: confab