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HS development merge 240522#141

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RevathiJambunathan merged 122 commits intoRevathiJambunathan:HarrisSheetinXRevathiJambunathan/WarpX:HarrisSheetinXfrom hklion:HSdevmerge_240522hklion/WarpX:HSdevmerge_240522Copy head branch name to clipboardMay 22, 2024

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Commits

Commits on Mar 12, 2024

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4763)

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• clean up (ECP-WarpX#4761)

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Commits on Mar 13, 2024

• remove superfluous include directives (ECP-WarpX#4770)

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Commits on Mar 14, 2024

• Adding hyper-resistivity to generalized ohms law hybrid solver. (ECP-WarpX#4772)

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• Doc: Conda -y Install Block (ECP-WarpX#4776)

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• Zenodo: Add Justin & Kale as Co-Authors (ECP-WarpX#4760)

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• Compute electrostatic fields at the beginning of EM simulations, if potential is specified (ECP-WarpX#4723)

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• Better error message when Poisson solver does not have supported boundary (ECP-WarpX#4778)

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Commits on Mar 15, 2024

• CI: isort + black compatibility (ECP-WarpX#4769)

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• fix redundant string init found with clang-tidy (ECP-WarpX#4781)

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• Remove WarpX:: from ablastr (ECP-WarpX#4782)

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Commits on Mar 16, 2024

• Define class function defineAllParticleTiles for NamedComponentParticleContainer (ECP-WarpX#4780)

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• update ml workflow for pasc revisions (ECP-WarpX#4768)

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Commits on Mar 19, 2024

• Add callbacks after B and E field pushes (ECP-WarpX#4784)

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• Add UB sanitizer CI test (ECP-WarpX#4783)

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• ApplyPECto Rho and J if partBndry reflecting/FieldBndry PEC (ECP-WarpX#4785)

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Commits on Mar 20, 2024

• Allow to set the initial potential in PICMI EM simulations (ECP-WarpX#4788)

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• Add QED lookup tables generator/reader in /Tools (ECP-WarpX#3137)

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• fix variable add in picmi lab particle diagnostics (ECP-WarpX#4793)

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Commits on Mar 21, 2024

• update Adastra doc (ECP-WarpX#4786)

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• Add function to get total weight of all particles in WarpXParticleContainer (ECP-WarpX#4795)

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• Electron current diagnostic for Hybrid solver (ECP-WarpX#4336)

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• Update spacecraft charging test (ECP-WarpX#4792)

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Commits on Mar 22, 2024

• Document the function add_applied_field in PICMI (ECP-WarpX#4794)

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Commits on Mar 23, 2024

• Docs: update hybrid-pic description and parameters (ECP-WarpX#4796)

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• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4800)

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• Fix a number of compilation warnings (ECP-WarpX#4801)

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Commits on Mar 25, 2024

• Clean up BeamRelevant with TypeMultiplier (ECP-WarpX#4798)

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• Fix ParticleHistogram2D (ECP-WarpX#4779)

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• Remove GPUClock Cost Function (ECP-WarpX#4802)

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Commits on Mar 26, 2024

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4803)

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• Cleaning: .rst Ending in TOC (ECP-WarpX#4804)

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Commits on Mar 28, 2024

• update fugaku_warpx.profile (ECP-WarpX#4808)

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• Evolve Loop: Simplify (ECP-WarpX#4791)

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Commits on Mar 29, 2024

• fix typos in scripts to run WarpX on Frontier (ECP-WarpX#4811)

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Commits on Mar 31, 2024

• Add thermalBC for particles (ECP-WarpX#4790)

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Commits on Apr 1, 2024

• Clang tidy CI test: add performance-unnecessary-* checks to clang-tidy CI test (ECP-WarpX#4136)

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• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4814)

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• Add clang-tidy workflow (ECP-WarpX#4806)

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• Clang tidy CI test: add several clang-analyzer-* checks to clang tidy CI test (ECP-WarpX#4684)

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• Doc: Perlmutter Update (ECP-WarpX#4809)

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Commits on Apr 2, 2024

• Printing out the time dependencies of the charge and current densities with multi-J PSATD. (ECP-WarpX#4815)

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• updated docs about focal distance (ECP-WarpX#4762)

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Commits on Apr 3, 2024

• Implement Poisson solver based on integrated Green functions (ECP-WarpX#4648)

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Commits on Apr 4, 2024

• Fix: ABLASTR FFT Poisson Solver (ECP-WarpX#4821)

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Commits on Apr 5, 2024

• repetitive member var in derived class (ECP-WarpX#4827)

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• Release 24.04 (ECP-WarpX#4824)

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• Fix outdated element-wise comparison based assertions (ECP-WarpX#4829)

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Commits on Apr 8, 2024

• Fix out of bounds memory access in HybridPICModel::GetCurrentExternal (ECP-WarpX#4830)

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• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4834)

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• [pre-commit.ci] pre-commit autoupdate (ECP-WarpX#4837)

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• HPC3 (UCI): Fix ADIOS2 HDF5 Build (ECP-WarpX#4836)

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• Output the potential phi on the macroparticles (ECP-WarpX#4599)

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Commits on Apr 9, 2024

• Remove calls to WarpX::GetInstance() in PEC class and cleaning (ECP-WarpX#4771)

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• Refactor output of phi on the particles (ECP-WarpX#4839)

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• Filter rho, when using relativistic electrostatic solver (ECP-WarpX#4823)

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Commits on Apr 10, 2024

• Fix out of bounds access to distance_to_eb (ECP-WarpX#4831)

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• Doc: LUMI (CSC) Update (ECP-WarpX#4810)

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• pybind11: v2.12.0 (ECP-WarpX#4844)

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• Add ohms law hybrid multifab redistribution (ECP-WarpX#4848)

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Commits on Apr 11, 2024

• Use function to remove invalid particles without MPI exchange (ECP-WarpX#4849)

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• Use BinaryCollision class for DSMC collisions (ECP-WarpX#4744)

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• Use local deleteInvalidParticles (instead of Redistribute) in binary collisions (ECP-WarpX#4851)

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Commits on Apr 12, 2024

• Update optimas/libensemble documentation (ECP-WarpX#4854)

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• Always update guard cells in WarpXSumGuardCells (ECP-WarpX#4840)

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Commits on Apr 15, 2024

• Set OpenMP threads manually on Perlmutter nodes (ECP-WarpX#4857)

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• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4858)

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• Optimizing GPU acceleration of binary collision algorithms. (ECP-WarpX#4577)

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Commits on Apr 16, 2024

• Add thermal boundary specification to picmi (ECP-WarpX#4850)

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• Add M. Haseeb in the list of developers (ECP-WarpX#4862)

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Commits on Apr 18, 2024

• Update pyAMReX (ECP-WarpX#4870)

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Commits on Apr 19, 2024

• Add function to set value of do_not_push (ECP-WarpX#4868)

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Commits on Apr 22, 2024

• Downgrade Reg Tests (ECP-WarpX#4882)

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• remove unnecessary include of WarpX.H (ECP-WarpX#4877)

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• Ensure that only necessary headers are included in FieldAccessorFunctors.H (ECP-WarpX#4878)

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• remove unnecessary include from FlushFormat.H (ECP-WarpX#4879)

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Commits on Apr 23, 2024

• Further downgrade regression_testing (ECP-WarpX#4884)

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• DepositCharge: Component 1 Allocated? (ECP-WarpX#4859)

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• AMReX: Weekly Update (ECP-WarpX#4881)

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• Reorder particle boundary handling and call to Redistribute (ECP-WarpX#4852)

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Commits on Apr 24, 2024

• remove offending calls to pip install in macOS build (ECP-WarpX#4887)

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• make sure that include guards start with WARPX_ (ECP-WarpX#4876)

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• Implement grid based merging algorithm (ECP-WarpX#4820)

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• Remove friend class PML from WarpX class (ECP-WarpX#4874)

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• move field type struct in a separate header (ECP-WarpX#4875)

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• remove call to WarpX::GetInstance() from FilterCreateTransformFromFAB.H (ECP-WarpX#4873)

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• remove calls to WarpX:GetInstance() from MacroscopicProperties.cpp (ECP-WarpX#4872)

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• TNSA Example: Link Domain Decomposition (ECP-WarpX#4885)

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• fix failing development builds (ECP-WarpX#4890)

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Commits on Apr 25, 2024

• Great Lakes Cluster (UMich) (ECP-WarpX#4869)

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• Open Governance Model (ECP-WarpX#4743)

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• openPMD-api: 0.15.2 (ECP-WarpX#4847)

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• Add two missing includes (found with iwyu) (ECP-WarpX#4895)

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Commits on Apr 29, 2024

• isort: First Party Modules (ECP-WarpX#4902)

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• Clarify ParticleContainerWrapper.add_particles() docstring (ECP-WarpX#4903)

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• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4904)

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• Doc: Great Lakes ADIOS2 Update (ECP-WarpX#4905)

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Commits on Apr 30, 2024

• Fix external fields on grid in 1D (ECP-WarpX#4906)

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Commits on May 2, 2024

• Add option for Cartesian velocity grid with VelocityCoincidenceThinning (ECP-WarpX#4886)

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Commits on May 3, 2024

• Fix Python installation instructions on Perlmutter (ECP-WarpX#4907)

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Commits on May 7, 2024

• Docs: Fix PASC Paper Formatting

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• Highlights: Fix Formatting Issue

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Commits on May 8, 2024

• make do_current_centering a regular member variable of the WarpX class (ECP-WarpX#4901)

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Commits on May 10, 2024

• Add CI test for velocity coincidence thinning (ECP-WarpX#4919)

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• Amend Notices for Non-Endorsement (ECP-WarpX#4924)

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Commits on May 12, 2024

• Diagnostics: Fix Position Selection (ECP-WarpX#4914)

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• Resetting charge buffers to zero. (ECP-WarpX#4916)

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• Update hip installation script for CI (ECP-WarpX#4927)

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Commits on May 13, 2024

• ElectrostaticSphereLabFrame_MR_emass_10: +Positions (ECP-WarpX#4930)

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• ablastr::particles::compute_weights : implement 1D and use template parameter to specify if field is nodal (ECP-WarpX#4846)

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• Remove redundant setVal(0) in ParticleReductionFunctor (ECP-WarpX#4926)

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• Code clean-up for binary collisions (ECP-WarpX#4921)

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• Release 24.05 (ECP-WarpX#4928)

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Commits on May 14, 2024

• LICENSE.txt: Wrap to 80 Characters (ECP-WarpX#4929)

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• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4931)

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Commits on May 15, 2024

• Updated proton-boron cross section (ECP-WarpX#4377)

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Commits on May 16, 2024

• Avoid un-needed copy in BackTransformParticleFunctor (ECP-WarpX#4934)

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Commits on May 18, 2024

• fix race conditions (ECP-WarpX#4932)

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Commits on May 20, 2024

• Ensure compilation with double precision particles for DSMC collisions (ECP-WarpX#4938)

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Commits on May 21, 2024

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4940)

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  ax3l

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• Promote DSMC calculations to double precision to allow use with single-precision particles (ECP-WarpX#4941)

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  archermarx

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Commits on May 22, 2024

• Merge remote-tracking branch 'upstream/development' into HSdevmerge_240522

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