Merge pull request #9 from bgruening/python2-ie-helpers

Add ie-helpers to python2
bgruening · May 10, 2016 · dd42946 · dd42946
2 parents bb29555 + 7d3ce50
commit dd42946
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diff --git a/Dockerfile b/Dockerfile
@@ -49,7 +49,7 @@ RUN conda config --add channels r && conda install --yes numpy pandas scikit-lea
 # Now for a python2 environment
 RUN conda create -p $CONDA_DIR/envs/python2 python=2.7 ipykernel numpy pandas scikit-learn rpy2 \
     biopython scikit-image matplotlib scipy seaborn sympy cython patsy statsmodels cloudpickle dill numba bokeh && conda clean -yt && \
-    /bin/bash -c "source activate python2 && pip install --no-cache-dir bioblend"
+    /bin/bash -c "source activate python2 && pip install --no-cache-dir bioblend galaxy-ie-helpers"
 
 RUN $CONDA_DIR/envs/python2/bin/python \
     $CONDA_DIR/envs/python2/bin/ipython \

diff --git a/startup.sh b/startup.sh
@@ -13,6 +13,8 @@
 # with the UID 1450 (preconfigured jupyter user) or a newly created 'galaxy' user
 # with the same UID/GID as /import.
 
+export PATH=/home/jovyan/.local/bin:$PATH
+
 python /get_notebook.py
 
 if [ ! -f /import/ipython_galaxy_notebook.ipynb ]; then