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docs\feat: #48 details on oxford pet experimemt
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- slight more details on oxfor pet experiments
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blotero committed Apr 21, 2024
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3 changes: 2 additions & 1 deletion docs/source/contribution.rst
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Expand Up @@ -89,4 +89,5 @@ For setting up a local jupyter notebook, run the following (inside your venv):
python -m ipykernel install --user --name=seg_tgce_env
Then, open jupyter lab and select the created kernel.
Then, open your preference tool (jupyter lab, vscode viewer, etc)
and select the created kernel.
21 changes: 21 additions & 0 deletions docs/source/experiments.rst
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Expand Up @@ -16,6 +16,27 @@ The images are of different sizes and aspect ratios.
The dataset is available at the following link:
https://www.robots.ox.ac.uk/~vgg/data/pets/

In particular, we used an implementation of this dataset in a simplified and
easily retriable format, available at the following link:

https://github.com/UN-GCPDS/python-gcpds.image_segmentation


Scorers emulation
=================

On itself, the Oxford-IIIT Pet dataset contains the masks which reffer to the
ground truth and not to labels from different annotators, which makes this
dataset non suitable for the original intention of the project. However, we
used this dataset to emulate the scorers' behavior, by training previously a model
with a simple UNet architecture and then using this model to predict for being
disturbed in the last encoder layer for producing scorers with different lebels of
agreement.

.. image:: resources/oxford_pet_scorers_emulation.png
:width: 100%
:align: center
:alt: How the scorers emulated noisy annotatiosn for the Oxford-IIIT Pet dataset look.

Crowd Seg Histopatological images
=================================
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1 change: 1 addition & 0 deletions docs/source/introduction.rst
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Expand Up @@ -13,6 +13,7 @@ correspond to different objects or parts of objects.
.. image:: resources/usual-segmentation.png
:width: 400
:alt: An example on how image segmentation resulting labels look like.
:align: center


What does multiple annotators mean?
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