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  1. FinaleToolkit FinaleToolkit Public

    FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

    Python 17 7

  2. cragr cragr Public

    R package for CRAG

    R 11 3

  3. FinaleMe FinaleMe Public

    Java 9 2

  4. CRAG CRAG Public

    De novo characterization of cell-free DNA fragmentation hotspots

    MATLAB 5 2

  5. finaledb_workflow finaledb_workflow Public

    Python 4 2

  6. finaledb_portal finaledb_portal Public

    JavaScript 3 1

Repositories

Showing 10 of 22 repositories
  • FinaleToolkit Public

    FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

    epifluidlab/FinaleToolkit’s past year of commit activity
    Python 17 MIT 7 0 1 Updated Feb 14, 2025
  • MethylSeqDesign Public Forked from liupeng2117/MethylSeqDesign

    MethylSeqDesign is a framework for power calculation and study design of Methy-Seq experiments by utilizing information from pilot data.

    epifluidlab/MethylSeqDesign’s past year of commit activity
    R 0 1 0 0 Updated Feb 11, 2025
  • POWEREDBiSeq Public Forked from dorotheavellame/POWEREDBiSeq

    Scripts for POWEREDBiSeq, a tool which estimates power in bisulfite sequencing studies

    epifluidlab/POWEREDBiSeq’s past year of commit activity
    R 0 1 0 0 Updated Feb 10, 2025
  • finaletoolkit_workflow Public

    Extract Finaletoolkit features from several files

    epifluidlab/finaletoolkit_workflow’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 3, 2025
  • FinaleMe Public
    epifluidlab/FinaleMe’s past year of commit activity
    Java 9 MIT 2 3 0 Updated Oct 30, 2024
  • finaletoolkit-docs Public
    epifluidlab/finaletoolkit-docs’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 10, 2024
  • epifluidlab.github.io Public
    epifluidlab/epifluidlab.github.io’s past year of commit activity
    HTML 2 BSD-3-Clause 0 0 3 Updated Sep 5, 2024
  • wf-pore-c Public Forked from epi2me-labs/wf-pore-c
    epifluidlab/wf-pore-c’s past year of commit activity
    Nextflow 0 9 0 0 Updated May 29, 2024
  • MAGNIFIER Public Forked from Goatofmountain/MAGNIFIER
    epifluidlab/MAGNIFIER’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 15, 2024
  • FRAGMA Public

    A recreation of the FRAGmentomics-based Methylation Analysis (FRAGMA) from Zhou et al. 2022

    epifluidlab/FRAGMA’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Jan 17, 2024
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