Packages to projects

_quarto.yml

@@ -10,7 +10,7 @@ website:
     left:
       - href: index.qmd
         text: Home
-      - packages.qmd
+      - projects.qmd
       #- learn.qmd
       - help.qmd
       - getinvolved.qmd

cards.qmd

@@ -1,4 +1,4 @@
-```{r echo=FALSE, results="asis", message=FALSE}
+```{r echo=FALSE, results="asis", message=FALSE, warning=FALSE}
 library(bslib)
 library(htmltools)
 library(glue)
@@ -21,7 +21,7 @@ card_r <- card(
   ),
   c_image(
     file = "assets/Rlogo.svg",
-    href = "packages.html#r-packages"
+    href = "projects.html#r-packages"
   )
 )
 card_python <- card(
@@ -31,7 +31,7 @@ card_python <- card(
   ),
   c_image(
     file = "assets/Pythonlogo.svg",
-    href = "packages.html#python-packages"
+    href = "projects.html#python-packages"
   )
 )
 card_docker <- card(
@@ -41,7 +41,7 @@ card_docker <- card(
   ),
   c_image(
     file = "assets/docker-mark-blue.png",
-    href = "packages.html#docker"
+    href = "projects.html#docker"
   )
 )
 card_comp <- card(
@@ -52,7 +52,7 @@ card_comp <- card(
   c_image(
     # from research-compendium.github.io
     file = "assets/rc-logo.svg",
-    href = "packages.html#research-compendia",
+    href = "projects.html#research-compendia",
     max_width = "88%"
   )
 )
@@ -63,7 +63,7 @@ card_wdl <- card(
   ),
   c_image(
     file = "assets/WDLlogo.png",
-    href = "packages.html#wdls"
+    href = "projects.html#wdls"
   )
 )
 card_nf <- card(
@@ -73,7 +73,7 @@ card_nf <- card(
   ),
   c_image(
     file = "assets/nf-logo.png",
-    href = "packages.html#nextflow"
+    href = "projects.html#nextflow"
   )
 )
 ```

getinvolved.qmd

@@ -1,18 +1,29 @@
 ---
 title: "Get Involved"
+toc: false
 ---
 
 ## DASL Guide
 
-The [WILDS Contributor Guide][guide] is the home for resources and best practices for WDL and Nextflow workflows, research compendia, Docker files and software.
-
-In addition, the guide outlines the best practices that we strive to follow while developing WILDS.
+We maintain the [WILDS Contributor Guide][guide] as a collection of guidelines,
+review criteria, and best practices for developing production-ready WDL and 
+Nextflow workflows, research compendia, Docker files and software.
 
+Our goal in developing the WILDS Contributor Guide is not just limitted to the
+care and keeping of WILDS, we hope it can serve as a model for research or
+software development groups in terms of how they think about code and software
+quality.
 
 ## Make a contribution
 
-If you would like to make a contribution to any DaSL WILDS products please open a pull request in the respective GitHub repository. For example, if you want to make a contribution to the [sixtyfour][] package, open a pull request in the repository for that package at <https://github.com/getwilds/sixtyfour/>.
+If you would like to make a contribution to any DaSL WILDS projects please open 
+a pull request in the appropriate GitHub repository. For example, if you want to 
+make a contribution to the [sixtyfour][six] package, open a pull request in 
+the repository for that package at <https://github.com/getwilds/sixtyfour/>.
+
+If you are interested in making another kind of contribution, we would be happy
+to chat. Please contact us at `[email protected]`.
 
 
 [guide]: https://getwilds.org/guide/
-[sixtyfour]: https://github.com/getwilds/sixtyfour/
+[six]: https://github.com/getwilds/sixtyfour/

help.qmd

@@ -1,12 +1,23 @@
 ---
 title: "Help"
+toc: false
 ---
 
-## Report a problem/ask a question/etc
+## Report a problem with one of our projects
 
-If you have a problem with any DaSL WILDS products please open an issue in the respective GitHub repository. For example, if you have an issue or question with the [sixtyfour][] package, open an issue in the issue tracker for that package at <https://github.com/getwilds/sixtyfour/issues>.
+If you have a problem with any DaSL WILDS projects please open an issue in the 
+respective GitHub repository. For example, if you have an issue or question 
+with the [sixtyfour][six] package, open an issue in the issue tracker for that 
+package at <https://github.com/getwilds/sixtyfour/issues>.
 
+## Get help using WILDS
 
+We are always happy to chat if you contact us at `[email protected]`. If you
+are a Fred Hutch employee or you work for one of the organizations in the 
+[Cancer Consortium][ccon] please schedule a [Data House Call][dhc] and mention
+WILDS in the booking.
 
-[sixtyfour]: https://github.com/getwilds/sixtyfour/
+[six]: https://github.com/getwilds/sixtyfour/
+[ccon]: https://www.cancerconsortium.org/
+[dhc]: https://hutchdatascience.org/datahousecalls/
 

index.qmd

@@ -26,15 +26,19 @@ cat("{{< fa box-open >}}  ")
 
 ### The Open Source Software Office of the Fred Hutchinson Cancer Center
 
-#### Our Missions
-
-In regocnition of ther fact that open source software is the engine of
-biomedical data science, the Data Science Lab (DaSL) created WILDS, the open
-source software office of the Fred Hutch Cancer Center. The mission of WILDS
-includes the following:
-
-- Engage with people developing open-source software across the Cancer
-Consortium.
+#### Our Mission
+
+Open source software has allowed the biomedical data science community to 
+flourish, and therefore to encourage open science practices and to cultivate
+the development of open source software at Fred Hutch, the Data Science Lab 
+(DaSL) created WILDS, the open source software office of the Fred Hutch Cancer 
+Center. The mission of WILDS includes the following:
+
+- Engage with the Cancer Consortium community about how they can adopt open
+science practices into their own workflows.
+- Educate our community about the critical role that open source software plays
+in biomedical data science practice.
+- Support open-source software developers across the Cancer Consortium.
 - Elevate the quality of open-source software being developed at Fred Hutch.
 - Empower new open-source developers by evangelizing best practices and
 catalyzing community around the open-source software development process.
@@ -43,7 +47,28 @@ academically publish, and publicize their software.
 - Collaborate within the Fred Hutch community to build the next generation of
 open source software tools.
 
-<br><br>
+#### Our Contribution
+
+To support our mission, WILDS is actively engaged in the following activities:
+
+- We maintain, distribute, and publish open source scientific software, mostly
+implemented in the Python and R ecosystems.
+- We maintain and distribute open source scientific workflows implemented in
+WDL or Nextflow. 
+- We develop [research compendia][rescomp] to demonstrate common data analyses
+and how they can best be organized and shared.
+- We package and develop Docker recipies and Dockerfiles so that researchers
+can run pipelines in consistent computing environments.
+- We create and maintain documentation about how to use and contribute to
+WILDS resources.
+- We co-sponsor and create materials for [DaSL's Community Studios][comm].
+
+All of these open source resources are designed for researchers to either use
+off-the-shelf or as tools and templates that they can adapt into their own work.
+Click on any of the boxes below to explore the resources that WILDS has to 
+offer.
+
+<!-- <br><br> -->
 
 {{< include cards.qmd >}}
 
@@ -63,9 +88,11 @@ layout_column_wrap(
 
 {{< fa circle-info >}} **Read** - [WILDS Contributor Guide][guide]
 
-{{< fa hammer >}} **Contribute** - See our [packages page](packages.html)
+{{< fa hammer >}} **Contribute** - See our [projects page](projects.html)
 
 
 
 [dasl]: https://hutchdatascience.org/
 [guide]: https://getwilds.org/guide/
+[comm]: https://hutchdatascience.org/communitystudios/
+[rescomp]: https://research-compendium.science/

packages.qmd → projects.qmd

@@ -1,8 +1,8 @@
 ---
-title: "Packages"
+title: "Projects"
 ---
 
-## WILDS Packages
+## WILDS Projects
 
 ```{r include=FALSE}
 library(glue)