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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 239 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 16 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 19 6

Repositories

Showing 10 of 245 repositories
  • icd11 Public

    ICD11 foundation ingest.

    monarch-initiative/icd11’s past year of commit activity
    Python 1 1 6 1 Updated Feb 1, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 231 (1 issue needs help) 19 Updated Feb 1, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 239 CC-BY-4.0 54 425 (3 issues need help) 40 Updated Feb 1, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 65 6 Updated Jan 31, 2025
  • monarch-project-template Public

    A Cookiecutter to kickstart Python based projects.

    monarch-initiative/monarch-project-template’s past year of commit activity
    Python 4 BSD-3-Clause 2 3 0 Updated Jan 31, 2025
  • oncopacket Public

    A package to convert cancer data to GA4GH phenopacket

    monarch-initiative/oncopacket’s past year of commit activity
    Jupyter Notebook 7 MIT 1 22 1 Updated Jan 31, 2025
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 5 MIT 1 16 0 Updated Jan 31, 2025
  • monarch_pheval Public
    monarch-initiative/monarch_pheval’s past year of commit activity
    Jinja 1 MIT 0 3 2 Updated Jan 31, 2025
  • monarch-semantic-similarity-profiles Public
    monarch-initiative/monarch-semantic-similarity-profiles’s past year of commit activity
    Jupyter Notebook 2 MIT 0 8 2 Updated Jan 31, 2025
  • phenio Public

    An integrated ontology for Phenomics

    monarch-initiative/phenio’s past year of commit activity
    Makefile 6 BSD-3-Clause 0 18 0 Updated Jan 30, 2025
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