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Pull requests: nf-core/tools

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Pull requests list

chore(deps): update dependency textual to v0.89.1
#3440 opened Feb 1, 2025 by renovate bot Loading…
1 task
chore(deps): update dependency pytest-textual-snapshot to v1.1.0
#3439 opened Feb 1, 2025 by renovate bot Loading…
1 task
1
chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.9.4
#3438 opened Feb 1, 2025 by renovate bot Loading…
1 task
1
remove hard coded key prefix for schema in launcher
#3432 opened Jan 28, 2025 by mashehu Loading…
6
Retrieving module information of input and output and EDAM ontology from bio.tools
#3418 opened Jan 21, 2025 by mirpedrol • Draft
3 of 6 tasks
7
chore(deps): update dependency prompt_toolkit to <=3.0.50
#3412 opened Jan 21, 2025 by renovate bot Loading…
1 task
1
run renovate weekly
#3410 opened Jan 20, 2025 by mashehu Loading…
3
Remove args stub from module template to satisfy language server
#3403 opened Jan 17, 2025 by jfy133 Loading…
4 tasks
3.3.0
12
Add nf-core template version badges to README
#3396 opened Jan 14, 2025 by jfy133 Loading…
4 tasks
chore(deps): update dependency textual to v1
#3380 opened Jan 1, 2025 by renovate bot Loading…
1 task
3.3.0
chore(deps): update dependency textual-dev to v1.7.0
#3378 opened Jan 1, 2025 by renovate bot Loading…
1 task
Fix usage of cache path and implement parallized testing WIP Work in progress
#3291 opened Nov 21, 2024 by mashehu • Draft
Template: Add gpu profile
#3272 opened Nov 7, 2024 by mashehu Loading… 3.3.0
16
3262 Fix pipeline lint bug for pipelines with minimal template features
#3265 opened Oct 30, 2024 by awgymer • Draft
4 tasks
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.3.0
10
Container cache download download nf-core download WIP Work in progress
#3163 opened Sep 7, 2024 by muffato • Draft
1 of 4 tasks
3.3.0
2
@muffato
14
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
6
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
2
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
3
Schema: rewrite to run local only and handle newer schema versions WIP Work in progress
#3117 opened Aug 14, 2024 by mashehu Loading…
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
feat: Install subworkflows with modules from different remotes enhancement
#3083 opened Jul 29, 2024 by jvfe Loading…
2 of 4 tasks
3.4.0
@jvfe
27
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
ci: Run checks on renovate branches to avoid creating and merging PRs
#3018 opened Jun 6, 2024 by edmundmiller Loading…
@edmundmiller
1
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
3.4.0
2
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