Repositories list

• staarpipeline-rap-batch

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Jan 20, 2025Jan 20, 2025

• favorannotator-rap

  Public
  An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP

  whole-exome-sequencingwhole-genome-sequencingfunctional-annotation+ 1favor-annotator

  R

  •

  MIT License

  •0•3•0•0•Updated Jan 11, 2025Jan 11, 2025

• MetaSTAARlite-Tutorial

  Public
  The tutorial for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, MetaSTAARlite and MetaSTAARliteSummary

  meta-analysisstatistical-geneticswhole-exome-sequencing+ 4whole-genome-sequencingfunctional-annotationrare-variant-meta-analysismetastaar-lite-pipeline

  R

  •1•1•0•0•Updated Dec 4, 2024Dec 4, 2024

• staarpipeline-rap

  Public
  An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP

  statistical-geneticswhole-exome-sequencingwhole-genome-sequencing+ 2functional-annotationstaar-pipeline

  R

  •

  MIT License

  •2•4•0•0•Updated Nov 19, 2024Nov 19, 2024

• MetaSTAARlite

  Public
  A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAAR pipeline

  meta-analysisstatistical-geneticswhole-exome-sequencing+ 4whole-genome-sequencingfunctional-annotationrare-variant-meta-analysismetastaar-lite-pipeline

  R

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Nov 7, 2024Nov 7, 2024

• staarpipelinesummary_indvar-rap

  Public
  An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP

  statistical-geneticswhole-exome-sequencingwhole-genome-sequencing+ 2functional-annotationstaar-pipeline

  R

  •

  MIT License

  •1•2•0•0•Updated Oct 3, 2023Oct 3, 2023

• staarpipelinesummary_varset-rap

  Public
  An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP

  statistical-geneticswhole-exome-sequencingwhole-genome-sequencing+ 2functional-annotationstaar-pipeline

  R

  •

  MIT License

  •1•2•0•0•Updated Oct 3, 2023Oct 3, 2023

• .github

  Public
  0•0•0•0•Updated Sep 14, 2023Sep 14, 2023