bump #165

	name: Offline tests (install w/ pip)

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:

	build:

	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- name: Setup Python 3.7
	uses: actions/setup-python@v2
	with:
	python-version: 3.7
	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Debug info
	run: \|
	echo "Running pwd..."
	pwd
	echo "CONDA?"
	echo $CONDA
	echo "GITHUB_PATH?"
	echo $GITHUB_PATH
	echo "\nRunning echo $USER..."
	echo $USER
	echo "\nRunning chown..."
	sudo chown -R -H -L $USER:$USER /home/runner/work/salmon/
	chown -R -H -L $USER:$USER /home/runner/work/salmon/
	echo "\nRunning chmod..."
	sudo chmod -R 777 /home/runner/work/salmon/
	echo "\nRunning `ls`..."
	ls
	- name: Prepare for docker build...
	run: \|
	chmod +x launch.sh
	# chown -R -H -L $USER:$USER .
	sudo chown -R -H -L $USER:$USER .
	sudo chown -R -H -L $USER:$USER salmon docs tests
	- name: Install Salmon
	run:
	pip install .
	pip install pytest
	- name: change directories
	run: cd /
	- name: Debug info (salmon.__file__)
	run: \|
	echo "Running python -c 'import salmon; print(salmon.__file__)'..."
	python -c "import salmon; print(salmon.__file__)"
	- name: Run offline tests
	run: sudo /usr/share/miniconda/bin/pytest /home/runner/work/salmon/salmon/tests/test_offline.py

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