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Ulthran committed Feb 28, 2024
1 parent c4ed537 commit b0c8056
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Showing 2 changed files with 5 additions and 1 deletion.
5 changes: 4 additions & 1 deletion .tests/conftest.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
import subprocess as sp
import sys


@pytest.fixture
def setup(tmpdir):
reads_fp = os.path.abspath(".tests/data/reads/")
Expand All @@ -17,7 +18,9 @@ def setup(tmpdir):
else:
profile_list = []

sp.check_output(["sunbeam", "init", "--data_fp", reads_fp, project_dir] + profile_list)
sp.check_output(
["sunbeam", "init", "--data_fp", reads_fp, project_dir] + profile_list
)

config_fp = os.path.join(project_dir, "sunbeam_config.yml")

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1 change: 1 addition & 0 deletions .tests/e2e/test_full_run.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
import os


def test_full_run(run_sunbeam):
(
bfragilis_sliding_cov_fp,
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