new release

monarch-initiative · Aug 25, 2018 · 0213c11 · 0213c11
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diff --git a/Changes.md b/Changes.md
@@ -1,3 +1,44 @@
+## 2018-08-24 release
+
+### New classes
+
+Addition of UBERON and GO grouping classes
+
+ * [nasolacrimal duct disease](http://purl.obolibrary.org/obo/MONDO_0044984)
+ * [face disease](http://purl.obolibrary.org/obo/MONDO_0044987)
+ * [lymphoid system disease](http://purl.obolibrary.org/obo/MONDO_0044986)
+ * [foot disease](http://purl.obolibrary.org/obo/MONDO_0044989)
+ * [hip disease](http://purl.obolibrary.org/obo/MONDO_0044988)
+ * [sympathetic nervous system disease](http://purl.obolibrary.org/obo/MONDO_0044993)
+ * [cerebral cortex disease](http://purl.obolibrary.org/obo/MONDO_0044996)
+ * [parasympathetic nervous system disease](http://purl.obolibrary.org/obo/MONDO_0044995)
+ * [hand disease](http://purl.obolibrary.org/obo/MONDO_0044990)
+ * [mouth mucosa disease](http://purl.obolibrary.org/obo/MONDO_0044992)
+ * [upper digestive tract disease](http://purl.obolibrary.org/obo/MONDO_0044991)
+ * [carpal region disease](http://purl.obolibrary.org/obo/MONDO_0044998)
+ * [midbrain disease](http://purl.obolibrary.org/obo/MONDO_0044997)
+ * [scalp disease](http://purl.obolibrary.org/obo/MONDO_0044999)
+ * [ligament disease](http://purl.obolibrary.org/obo/MONDO_0045004)
+ * [vertebral disease](http://purl.obolibrary.org/obo/MONDO_0045002)
+ * [scrotal disease](http://purl.obolibrary.org/obo/MONDO_0045003)
+ * [cardiac ventricle disease](http://purl.obolibrary.org/obo/MONDO_0045001)
+ * [cholesterol metabolism disease](http://purl.obolibrary.org/obo/MONDO_0045008)
+ * [glycoprotein metabolism disease](http://purl.obolibrary.org/obo/MONDO_0045010)
+ * [cholesterol biosynthetic process disease](http://purl.obolibrary.org/obo/MONDO_0045017)
+ * [creatine biosynthetic process disease](http://purl.obolibrary.org/obo/MONDO_0045018)
+ * [carbohydrate transport disease](http://purl.obolibrary.org/obo/MONDO_0045015)
+ * [cholesterol catabolic process disease](http://purl.obolibrary.org/obo/MONDO_0045016)
+ * [disease of extraembryonic membrane](http://purl.obolibrary.org/obo/MONDO_0045013)
+ * [tetrahydrobiopterin metabolic process disease](http://purl.obolibrary.org/obo/MONDO_0045014)
+ * [keratinization disease](http://purl.obolibrary.org/obo/MONDO_0045011)
+ * [steroid metabolism disease](http://purl.obolibrary.org/obo/MONDO_0045012)
+ * [lactation disease](http://purl.obolibrary.org/obo/MONDO_0045019)
+ * [glycine metabolic process disease](http://purl.obolibrary.org/obo/MONDO_0045020)
+ * [sucrose intolerance disease](http://purl.obolibrary.org/obo/MONDO_0045021)
+ * [disorder of organic acid metabolism](http://purl.obolibrary.org/obo/MONDO_0045022)
+ * [acquired adrenogenital syndrome](http://purl.obolibrary.org/obo/MONDO_0045023)
+
+
 ## 2018-08-19 release
 
 ### Summary

diff --git a/imports/equivalencies.obo b/imports/equivalencies.obo
@@ -204717,6 +204717,10 @@ equivalent_to: SCTID:116021002
 id: MONDO:0045023
 equivalent_to: SCTID:190512008
 
+[Term]
+id: MONDO:0045027
+equivalent_to: SCTID:128598002
+
 [Term]
 id: MONDO:0100010
 equivalent_to: SCTID:68172002

diff --git a/imports/equivalencies.owl b/imports/equivalencies.owl
@@ -529151,6 +529151,14 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/MONDO_0045027 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0045027">
+        <owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/SCTID_128598002"/>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/MONDO_0100004 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0100004"/>
@@ -626347,6 +626355,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/SCTID_128598002 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/SCTID_128598002"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/SCTID_128605003 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/SCTID_128605003"/>

diff --git a/imports/go_import.obo b/imports/go_import.obo
@@ -13608,6 +13608,13 @@ intersection_of: GO:0008150 ! biological_process
 intersection_of: RO:0002212 GO:0000070 ! negatively regulates mitotic sister chromatid segregation
 relationship: RO:0002212 GO:0000070 ! negatively regulates mitotic sister chromatid segregation
 
+[Term]
+id: GO:0033059
+name: cellular pigmentation
+def: "The deposition or aggregation of coloring matter in a cell." []
+is_a: GO:0009987 ! cellular process
+is_a: GO:0043473 ! pigmentation
+
 [Term]
 id: GO:0033077
 name: T cell differentiation in thymus

diff --git a/imports/go_import.owl b/imports/go_import.owl
@@ -26280,6 +26280,17 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GO_0033059 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033059">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0009987"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0043473"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The deposition or aggregation of coloring matter in a cell.</obo:IAO_0000115>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cellular pigmentation</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_0033077 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033077">

diff --git a/src/ontology/imports/go_import.obo b/src/ontology/imports/go_import.obo
@@ -13608,6 +13608,13 @@ intersection_of: GO:0008150 ! biological_process
 intersection_of: RO:0002212 GO:0000070 ! negatively regulates mitotic sister chromatid segregation
 relationship: RO:0002212 GO:0000070 ! negatively regulates mitotic sister chromatid segregation
 
+[Term]
+id: GO:0033059
+name: cellular pigmentation
+def: "The deposition or aggregation of coloring matter in a cell." []
+is_a: GO:0009987 ! cellular process
+is_a: GO:0043473 ! pigmentation
+
 [Term]
 id: GO:0033077
 name: T cell differentiation in thymus

diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl
@@ -26280,6 +26280,17 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GO_0033059 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033059">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0009987"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0043473"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The deposition or aggregation of coloring matter in a cell.</obo:IAO_0000115>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cellular pigmentation</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_0033077 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033077">

diff --git a/src/ontology/imports/go_terms.txt b/src/ontology/imports/go_terms.txt
@@ -499,6 +499,7 @@ http://purl.obolibrary.org/obo/GO_0006694
 http://purl.obolibrary.org/obo/GO_0006695
 http://purl.obolibrary.org/obo/GO_0006699
 http://purl.obolibrary.org/obo/GO_0006704
+http://purl.obolibrary.org/obo/GO_0006706
 http://purl.obolibrary.org/obo/GO_0006707
 http://purl.obolibrary.org/obo/GO_0006720
 http://purl.obolibrary.org/obo/GO_0006721
@@ -646,6 +647,7 @@ http://purl.obolibrary.org/obo/GO_0008104
 http://purl.obolibrary.org/obo/GO_0008144
 http://purl.obolibrary.org/obo/GO_0008150
 http://purl.obolibrary.org/obo/GO_0008152
+http://purl.obolibrary.org/obo/GO_0008168
 http://purl.obolibrary.org/obo/GO_0008202
 http://purl.obolibrary.org/obo/GO_0008203
 http://purl.obolibrary.org/obo/GO_0008206
@@ -678,13 +680,15 @@ http://purl.obolibrary.org/obo/GO_0008483
 http://purl.obolibrary.org/obo/GO_0008484
 http://purl.obolibrary.org/obo/GO_0008509
 http://purl.obolibrary.org/obo/GO_0008514
+http://purl.obolibrary.org/obo/GO_0008544
 http://purl.obolibrary.org/obo/GO_0008610
 http://purl.obolibrary.org/obo/GO_0008611
 http://purl.obolibrary.org/obo/GO_0008614
 http://purl.obolibrary.org/obo/GO_0008643
 http://purl.obolibrary.org/obo/GO_0008645
 http://purl.obolibrary.org/obo/GO_0008652
 http://purl.obolibrary.org/obo/GO_0008654
+http://purl.obolibrary.org/obo/GO_0008757
 http://purl.obolibrary.org/obo/GO_0009056
 http://purl.obolibrary.org/obo/GO_0009057
 http://purl.obolibrary.org/obo/GO_0009058
@@ -772,6 +776,7 @@ http://purl.obolibrary.org/obo/GO_0009893
 http://purl.obolibrary.org/obo/GO_0009894
 http://purl.obolibrary.org/obo/GO_0009895
 http://purl.obolibrary.org/obo/GO_0009896
+http://purl.obolibrary.org/obo/GO_0009913
 http://purl.obolibrary.org/obo/GO_0009914
 http://purl.obolibrary.org/obo/GO_0009966
 http://purl.obolibrary.org/obo/GO_0009967
@@ -876,6 +881,7 @@ http://purl.obolibrary.org/obo/GO_0014064
 http://purl.obolibrary.org/obo/GO_0014070
 http://purl.obolibrary.org/obo/GO_0014706
 http://purl.obolibrary.org/obo/GO_0015031
+http://purl.obolibrary.org/obo/GO_0015067
 http://purl.obolibrary.org/obo/GO_0015068
 http://purl.obolibrary.org/obo/GO_0015075
 http://purl.obolibrary.org/obo/GO_0015085
@@ -907,8 +913,10 @@ http://purl.obolibrary.org/obo/GO_0015872
 http://purl.obolibrary.org/obo/GO_0015888
 http://purl.obolibrary.org/obo/GO_0015889
 http://purl.obolibrary.org/obo/GO_0015893
+http://purl.obolibrary.org/obo/GO_0015923
 http://purl.obolibrary.org/obo/GO_0015925
 http://purl.obolibrary.org/obo/GO_0015926
+http://purl.obolibrary.org/obo/GO_0015927
 http://purl.obolibrary.org/obo/GO_0015929
 http://purl.obolibrary.org/obo/GO_0015980
 http://purl.obolibrary.org/obo/GO_0015985
@@ -933,10 +941,12 @@ http://purl.obolibrary.org/obo/GO_0016108
 http://purl.obolibrary.org/obo/GO_0016116
 http://purl.obolibrary.org/obo/GO_0016125
 http://purl.obolibrary.org/obo/GO_0016126
+http://purl.obolibrary.org/obo/GO_0016127
 http://purl.obolibrary.org/obo/GO_0016175
 http://purl.obolibrary.org/obo/GO_0016192
 http://purl.obolibrary.org/obo/GO_0016202
 http://purl.obolibrary.org/obo/GO_0016209
+http://purl.obolibrary.org/obo/GO_0016229
 http://purl.obolibrary.org/obo/GO_0016250
 http://purl.obolibrary.org/obo/GO_0016301
 http://purl.obolibrary.org/obo/GO_0016310
@@ -972,6 +982,7 @@ http://purl.obolibrary.org/obo/GO_0016670
 http://purl.obolibrary.org/obo/GO_0016684
 http://purl.obolibrary.org/obo/GO_0016705
 http://purl.obolibrary.org/obo/GO_0016740
+http://purl.obolibrary.org/obo/GO_0016741
 http://purl.obolibrary.org/obo/GO_0016746
 http://purl.obolibrary.org/obo/GO_0016747
 http://purl.obolibrary.org/obo/GO_0016755
@@ -1127,6 +1138,7 @@ http://purl.obolibrary.org/obo/GO_0030202
 http://purl.obolibrary.org/obo/GO_0030203
 http://purl.obolibrary.org/obo/GO_0030210
 http://purl.obolibrary.org/obo/GO_0030212
+http://purl.obolibrary.org/obo/GO_0030216
 http://purl.obolibrary.org/obo/GO_0030217
 http://purl.obolibrary.org/obo/GO_0030218
 http://purl.obolibrary.org/obo/GO_0030219
@@ -1264,6 +1276,7 @@ http://purl.obolibrary.org/obo/GO_0032108
 http://purl.obolibrary.org/obo/GO_0032109
 http://purl.obolibrary.org/obo/GO_0032217
 http://purl.obolibrary.org/obo/GO_0032218
+http://purl.obolibrary.org/obo/GO_0032259
 http://purl.obolibrary.org/obo/GO_0032268
 http://purl.obolibrary.org/obo/GO_0032269
 http://purl.obolibrary.org/obo/GO_0032270
@@ -1327,6 +1340,7 @@ http://purl.obolibrary.org/obo/GO_0033045
 http://purl.obolibrary.org/obo/GO_0033046
 http://purl.obolibrary.org/obo/GO_0033047
 http://purl.obolibrary.org/obo/GO_0033048
+http://purl.obolibrary.org/obo/GO_0033059
 http://purl.obolibrary.org/obo/GO_0033077
 http://purl.obolibrary.org/obo/GO_0033081
 http://purl.obolibrary.org/obo/GO_0033085
@@ -1361,6 +1375,7 @@ http://purl.obolibrary.org/obo/GO_0033605
 http://purl.obolibrary.org/obo/GO_0033673
 http://purl.obolibrary.org/obo/GO_0033674
 http://purl.obolibrary.org/obo/GO_0033683
+http://purl.obolibrary.org/obo/GO_0033764
 http://purl.obolibrary.org/obo/GO_0033844
 http://purl.obolibrary.org/obo/GO_0033993
 http://purl.obolibrary.org/obo/GO_0034097
@@ -1374,6 +1389,7 @@ http://purl.obolibrary.org/obo/GO_0034248
 http://purl.obolibrary.org/obo/GO_0034249
 http://purl.obolibrary.org/obo/GO_0034250
 http://purl.obolibrary.org/obo/GO_0034255
+http://purl.obolibrary.org/obo/GO_0034311
 http://purl.obolibrary.org/obo/GO_0034399
 http://purl.obolibrary.org/obo/GO_0034404
 http://purl.obolibrary.org/obo/GO_0034440
@@ -1582,6 +1598,7 @@ http://purl.obolibrary.org/obo/GO_0043484
 http://purl.obolibrary.org/obo/GO_0043504
 http://purl.obolibrary.org/obo/GO_0043549
 http://purl.obolibrary.org/obo/GO_0043576
+http://purl.obolibrary.org/obo/GO_0043588
 http://purl.obolibrary.org/obo/GO_0043603
 http://purl.obolibrary.org/obo/GO_0043604
 http://purl.obolibrary.org/obo/GO_0043648
@@ -1697,6 +1714,12 @@ http://purl.obolibrary.org/obo/GO_0045597
 http://purl.obolibrary.org/obo/GO_0045598
 http://purl.obolibrary.org/obo/GO_0045599
 http://purl.obolibrary.org/obo/GO_0045600
+http://purl.obolibrary.org/obo/GO_0045604
+http://purl.obolibrary.org/obo/GO_0045605
+http://purl.obolibrary.org/obo/GO_0045606
+http://purl.obolibrary.org/obo/GO_0045616
+http://purl.obolibrary.org/obo/GO_0045617
+http://purl.obolibrary.org/obo/GO_0045618
 http://purl.obolibrary.org/obo/GO_0045619
 http://purl.obolibrary.org/obo/GO_0045620
 http://purl.obolibrary.org/obo/GO_0045621
@@ -1727,6 +1750,9 @@ http://purl.obolibrary.org/obo/GO_0045669
 http://purl.obolibrary.org/obo/GO_0045670
 http://purl.obolibrary.org/obo/GO_0045671
 http://purl.obolibrary.org/obo/GO_0045672
+http://purl.obolibrary.org/obo/GO_0045682
+http://purl.obolibrary.org/obo/GO_0045683
+http://purl.obolibrary.org/obo/GO_0045684
 http://purl.obolibrary.org/obo/GO_0045700
 http://purl.obolibrary.org/obo/GO_0045701
 http://purl.obolibrary.org/obo/GO_0045702
@@ -1809,6 +1835,7 @@ http://purl.obolibrary.org/obo/GO_0046110
 http://purl.obolibrary.org/obo/GO_0046136
 http://purl.obolibrary.org/obo/GO_0046137
 http://purl.obolibrary.org/obo/GO_0046146
+http://purl.obolibrary.org/obo/GO_0046164
 http://purl.obolibrary.org/obo/GO_0046165
 http://purl.obolibrary.org/obo/GO_0046173
 http://purl.obolibrary.org/obo/GO_0046189
@@ -1859,6 +1886,7 @@ http://purl.obolibrary.org/obo/GO_0046942
 http://purl.obolibrary.org/obo/GO_0046943
 http://purl.obolibrary.org/obo/GO_0046950
 http://purl.obolibrary.org/obo/GO_0046952
+http://purl.obolibrary.org/obo/GO_0046997
 http://purl.obolibrary.org/obo/GO_0047045
 http://purl.obolibrary.org/obo/GO_0047291
 http://purl.obolibrary.org/obo/GO_0047598
@@ -2416,6 +2444,7 @@ http://purl.obolibrary.org/obo/GO_0090317
 http://purl.obolibrary.org/obo/GO_0090324
 http://purl.obolibrary.org/obo/GO_0090357
 http://purl.obolibrary.org/obo/GO_0090358
+http://purl.obolibrary.org/obo/GO_0090368
 http://purl.obolibrary.org/obo/GO_0090394
 http://purl.obolibrary.org/obo/GO_0090407
 http://purl.obolibrary.org/obo/GO_0090482
@@ -2636,6 +2665,7 @@ http://purl.obolibrary.org/obo/GO_1901605
 http://purl.obolibrary.org/obo/GO_1901606
 http://purl.obolibrary.org/obo/GO_1901607
 http://purl.obolibrary.org/obo/GO_1901615
+http://purl.obolibrary.org/obo/GO_1901616
 http://purl.obolibrary.org/obo/GO_1901617
 http://purl.obolibrary.org/obo/GO_1901661
 http://purl.obolibrary.org/obo/GO_1901663
@@ -2920,6 +2950,9 @@ http://purl.obolibrary.org/obo/GO_2000145
 http://purl.obolibrary.org/obo/GO_2000146
 http://purl.obolibrary.org/obo/GO_2000147
 http://purl.obolibrary.org/obo/GO_2000181
+http://purl.obolibrary.org/obo/GO_2000214
+http://purl.obolibrary.org/obo/GO_2000215
+http://purl.obolibrary.org/obo/GO_2000216
 http://purl.obolibrary.org/obo/GO_2000224
 http://purl.obolibrary.org/obo/GO_2000225
 http://purl.obolibrary.org/obo/GO_2000241