Merge pull request #1989 from monarch-initiative/fix-make-2020-09-14

Update HGNC goal which was broken

src/ontology/Makefile

@@ -648,7 +648,10 @@ mirror/dipper-%.obo: mirror/dipper-%.ttl
 	robot convert -i $< -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@
 
 mirror/hgnc.owl: mirror/dipper-hgnc.ttl
-	robot query --format ttl -c ../sparql/construct-hgnc.sparql $@ -i $<
+	robot query -i $< --format ttl -c ../sparql/construct-hgnc.sparql $@ \
+		annotate --annotation http://purl.org/dc/elements/1.1/type http://purl.obolibrary.org/obo/IAO_8000001 \
+		--ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \
+		--output $@.tmp.owl && mv $@.tmp.owl $@
 #	robot query construct
 #	owltools $< --remove-axioms -t EquivalentClasses -o $@
 #	owltools $< --remove-dangling -o $@

src/ontology/run.sh

@@ -9,4 +9,4 @@
 # we therefore map the whole repo (../..) to a docker volume.
 #
 # See README-editors.md for more details.
-docker run --memory=8g -e ROBOT_JAVA_ARGS='-Xmx15G' -e JAVA_OPTS='-Xmx15G' -v $PWD/../../:/work -w /work/src/ontology --rm -ti obolibrary/odkfull "$@"
+docker run --memory=8g -e ROBOT_JAVA_ARGS='-Xmx8G' -e JAVA_OPTS='-Xmx8G' -v $PWD/../../:/work -w /work/src/ontology --rm -ti obolibrary/odkfull "$@"