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Monthly confirmed subclass evidence update #8422

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merged 4 commits into from
Nov 22, 2024
Merged

Monthly confirmed subclass evidence update #8422

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0827444
[create-pull-request] automated change
twhetzel Nov 20, 2024
46384ae
remove incorrectly added subclass axiom
twhetzel Nov 21, 2024
44ca58c
remove parent classes that are stated to be excluded
twhetzel Nov 21, 2024
f01bc19
add back subclassof and remove excluded_subclassof relationship
twhetzel Nov 22, 2024
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9 changes: 4 additions & 5 deletions src/ontology/mondo-edit.obo
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Expand Up @@ -153525,7 +153525,6 @@ xref: Orphanet:25968 {source="MONDO:equivalentTo", source="OMIM:132090"}
xref: UMLS:C1851549 {source="MONDO:equivalentTo", source="MONDO:MEDGEN", source="MEDGEN:377052"}
is_a: MONDO:0015650 {source="https://orcid.org/0000-0001-5208-3432"} ! epilepsy syndrome
is_a: MONDO:0020072 {source="https://orcid.org/0000-0001-5208-3432", source="https://www.epilepsydiagnosis.org/syndrome/epilepsy-syndrome-groupoverview.html"} ! childhood-onset epilepsy syndrome
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relationship: excluded_subClassOf MONDO:0020072 {source="Orphanet:25968", source="https://orcid.org/0000-0001-5208-3432"} ! childhood-onset epilepsy syndrome
property_value: seeAlso "https://rarediseases.info.nih.gov/diseases/2170/epilepsy-benign-occipital" xsd:anyURI {source="GARD:0002170"}

[Term]
Expand Down Expand Up @@ -463044,7 +463043,7 @@ xref: DOID:0080472 {source="MONDO:equivalentTo"}
xref: MEDGEN:1626137 {source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
xref: OMIM:617711 {source="MONDO:equivalentTo"}
xref: UMLS:C4540199 {source="MEDGEN:1626137", source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
is_a: MONDO:0100062 {source="OMIM:617711"} ! developmental and epileptic encephalopathy
is_a: MONDO:0100062 {source="DOID:0080472", source="OMIM:617711"} ! developmental and epileptic encephalopathy
relationship: excluded_subClassOf MONDO:0020627 {source="OMIM:617711", source="https://orcid.org/0000-0001-5208-3432"} ! epileptic encephalopathy, infantile or early childhood
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4521" xsd:anyURI

Expand All @@ -463064,7 +463063,7 @@ xref: MEDGEN:1638319 {source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
xref: OMIM:617829 {source="MONDO:equivalentTo"}
xref: Orphanet:442835 {source="OMIM:617829"}
xref: UMLS:C4693362 {source="MONDO:equivalentTo", source="MONDO:MEDGEN", source="MEDGEN:1638319"}
is_a: MONDO:0100062 {source="OMIM:617829", source="https://orcid.org/0000-0001-5208-3432"} ! developmental and epileptic encephalopathy
is_a: MONDO:0100062 {source="DOID:0080471", source="OMIM:617829", source="https://orcid.org/0000-0001-5208-3432"} ! developmental and epileptic encephalopathy
relationship: excluded_subClassOf MONDO:0020627 {source="OMIM:617829", source="https://orcid.org/0000-0001-5208-3432"} ! epileptic encephalopathy, infantile or early childhood
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4521" xsd:anyURI

Expand All @@ -463084,7 +463083,7 @@ xref: MEDGEN:1642888 {source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
xref: OMIM:618012 {source="MONDO:equivalentTo"}
xref: Orphanet:442835 {source="OMIM:618012"}
xref: UMLS:C4693934 {source="MONDO:equivalentTo", source="MONDO:MEDGEN", source="MEDGEN:1642888"}
is_a: MONDO:0100062 {source="OMIM:618012"} ! developmental and epileptic encephalopathy
is_a: MONDO:0100062 {source="DOID:0112275", source="OMIM:618012"} ! developmental and epileptic encephalopathy
relationship: excluded_subClassOf MONDO:0020627 {source="OMIM:618012", source="https://orcid.org/0000-0001-5208-3432"} ! epileptic encephalopathy, infantile or early childhood
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4521" xsd:anyURI

Expand Down Expand Up @@ -556598,7 +556597,7 @@ xref: MEDGEN:1841215 {source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
xref: OMIM:620422 {source="MONDO:equivalentTo"}
xref: UMLS:C5830579 {source="MONDO:equivalentTo", source="MONDO:MEDGEN", source="MEDGEN:1841215"}
is_a: MONDO:0003847 {source="OMIM:620422", source="https://orcid.org/0000-0001-5208-3432"} ! hereditary disease
is_a: MONDO:0019200 {source="https://orcid.org/0000-0001-5208-3432"} ! retinitis pigmentosa
is_a: MONDO:0019200 {source="OMIM:620422", source="https://orcid.org/0000-0001-5208-3432"} ! retinitis pigmentosa
relationship: excluded_from_qc_check http://purl.obolibrary.org/obo/mondo/sparql/qc/mondo/qc-omim-subsumption.sparql

[Term]
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