v0.3.2

v0.3.2 (2019-11-04)

Fixed bugs:

• Fix FWHM calculation failure

v0.3.1

v0.3.1 (2019-11-01)

Implemented enhancements:

• Support VSN calculation
• Save number of (mappable) reads as a file for replotting
• Improve minimum coefficient obtaining method

Fixed bugs:

• Avoid arctanh divergence

v0.3.0

v0.3.0 (2019-07-03)

• Drop python3.4 support
  Implemented enhancements:
• Use Fisher's r-to-z transformation to averaging coefficients
• Add chromosome selecting options

v0.2.6

v0.2.6 (2019-01-09)

Implemented enhancements:

• Add --mask-size option to avoid calling the phantom peak a library length.
  Warnings messages were also implemented.

Fixed bugs:

• Fix read counter for unmapped reads.
• Fix bigwig reader.
• Fix mappability stats loader.

v0.2.5

v0.2.5 (2019-01-05)

Implemented enhancements:

• Include pre-built C sources and support both pre-built source installation and
  native Cython compile (cython is no longer mandatory dependency).
• Check compatible python versions. (3.4 and 3.7 additionally)
• Scipy is no longer required.

Fixed bugs:

• Omit functools.partialmethod to keep python2 compatibility.
• Fix minor argparse issues and a error message.

v0.2.4

v0.2.4 (2018-05-09)

Fixed bugs:

• Reduce smooth window default size to 15 (Longer lengths are suitable for
  samples with long fragments (such as broad sources) but it's not robust.)
• Use read lengths calculated from CIGAR alignments instead of sequence lengths
• Fix build issue

v0.2.3

v0.2.3 (2018-05-04)

Implemented enhancements:

• Add pymasc-plot command
• Optimize the default window size for moving average filter for mappability
  sensitive cross-correlation (change from 15 to 100)
• Add annotations to figures about expected library length

Fixed bugs:

• Fix bugs relate to mappability sensitive cross-correlation calculation
  Now bitarray and successive implementations return exactly same results

Merge pull request #4 from ronin-gw/v0.2.2

v0.2.2 (2017-12-26)

Implemented enhancements:

• Warn reference lenth discordancy between alignment and mappability file

Fixed bugs:

• Add forgetted initial rotate for mappability array
• BitArray length shortage if mappability tracks include positions which are out
  of range of alignment file reference length

v0.2.1

v0.2.1 (2017-12-23)

Fixed bugs:

• BitArray length shortage for reverse strand reads
• BitArray implementation fails for chromosomes which have no mapped reads

v0.2.0

v0.2.0 (2017-12-05)

Implemented enhancements:

• Add BitArray implementation
• Some refactoring

Fixed bugs:

• Shift size shorter than read length is not acceptable now
• Default window size for smoothing changes 30 to 15

Known issues:

• Progress display for bitarray calculation with multiprocessing is currently
  disabled due to multiprocessing.Queue stuffing