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index should be emitted as either tbi or csi #7385

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index should be emitted as either tbi or csi #7385

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69b9397
index should be emitted as either tbi or csi
tkchafin Jan 28, 2025
b5dd005
Merge branch 'master' into tkchafin-patch-1
tkchafin Jan 28, 2025
093d197
Merge branch 'master' into tkchafin-patch-1
famosab Feb 6, 2025
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10 changes: 5 additions & 5 deletions modules/nf-core/deepvariant/rundeepvariant/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -15,11 +15,11 @@ process DEEPVARIANT_RUNDEEPVARIANT {
tuple val(meta5), path(par_bed)

output:
tuple val(meta), path("${prefix}.vcf.gz") , emit: vcf
tuple val(meta), path("${prefix}.vcf.gz.tbi") , emit: vcf_tbi
tuple val(meta), path("${prefix}.g.vcf.gz") , emit: gvcf
tuple val(meta), path("${prefix}.g.vcf.gz.tbi"), emit: gvcf_tbi
path "versions.yml" , emit: versions
tuple val(meta), path("${prefix}.vcf.gz") , emit: vcf
tuple val(meta), path("${prefix}.vcf.gz.{tbi,csi}") , emit: vcf_index
tuple val(meta), path("${prefix}.g.vcf.gz") , emit: gvcf
tuple val(meta), path("${prefix}.g.vcf.gz.{tbi,csi}") , emit: gvcf_index
path "versions.yml" , emit: versions

when:
task.ext.when == null || task.ext.when
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